Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01056 ATGCTGCTACCTGACCCTGCCGCTGGCCACGGCGGCTCTGTGGTCGTCGTCGGGGTCAGAATGGAACTCCAGAGTCGGGAATTGCTCACTTGGGCGCTTGTTAAGGTTGCTCAGCCTGGAGATTGTGTCATTGCTCTTCATGTTCTTGATTCTGCCGCTGGTAATTGTTTTGTTTTGCGACCTTTTGATGAGGGGAAGTTGACTTTGCTCTCTCTTGTGAAGTCGTTTGACTCTATGTTGTCCGCTTATGAAGGATTCTGCAACCTGAAGCAGATTGATTTGAAGCTCAAAGTCTGCCGAGGTTCGCCGGTCCGGAAAATCATTAGACGGGAAGTGGATTCGTACGGTGAGGCTTCTCTAATTCTCGGTACTTCCAAATCTCACCATAGAATCCGTTCGTCGGCCTCGGTTGCTAAGTACTGCGCTAGAAAATTGCCGAGCAGATTCAGTGTTTTAGCAGTTAATAGTGGCAAAGTCATTTTCCAGAGATTAGCGACTTTCTCAACTAAAGGCCAGTCTCGAGACAAGGATAGGGACAAGAATTGTGCTGCCATTGTAGAAGTAGCTAATGAAGCAAAAGCTGATGGGTTAGCTACAAACTTTATCGACAGTCATATTTTTTTACAGAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTCCGTTGAGGGCACTCCATCTTCGCTTGAACGGAATGATTCCGGGACTGAATTGGTTGATGAGTTACCTGAGGACATTGCTGTGGGGAATTCACTAGCTTTAGTACCATTTCATAAGCCTCAGGGATCGTTGACGTCGAATTCCATTGTGAGTCGAGAATCATCACATTGGAAATCGAGTTGGCCGCTTCTTCGACGTATATTTTTGTCCAAGCAGCATGTAGAGAAATCTTCAAAGAAGTTTTCTATGTTCCAAGGCGTATTGCACGTTCCAAACATCCAGTCGTCGTCCTCAGCCTTGGTTTATCCAGATCAGAAACAGAACAATTCTGATCAGGATCAGGGTTCCACCATTGATAGGGAGTGTGGTGCAATTGTGCCATATGGGTCCGGCTACATTTTCGGAAGCCTTCCCAAAGAGGTATTGGATTTGAAGGATAAGTACTCATCCACCTGCAGATTGTTTACTTATGAGGAACTTTTGTCAGCAACGTCTAATTTTATGCCTGAGAATATGGTTGGTAAAGGAGGTAGTAGCTACGTTTACCGAGGGCTTCTTCCTGATGGCAAGGAAATTGCTGTCAAAGTTTTGAAGCCATCTGAGAATGTTCTTAAGGAGTTTGTTCAGGAAGTTGGGATCATTGCGACTTCAACTCATAAGAATGTTATATCTTTAATGGGTTTTTGTTTGGAGGACAATAATTTACTGTTGGTCTATGGTTTTCTTTCAAGAGGAAGTTTGGAAGAGAATCTTCACGGTTGTAAGAAGGATGTGAATTCATTTGGTTGGCAAGAGAGGTTTAAGGTTGCTGTTGGTGTTGCTGAGGCTCTAGATTATTTACATAATTGCAGGGAGGAACCTGTGATACACAGGGATGTGAAATCCTCTAACATTCTGCTTTCTGAGAATTTCGAACCTCAGCTTTCCGATTTTGGGCTTGCTAGTTGGGCATCCTCGTGCTTTCAAATCACTTGTACTGACGTAGCTGGAACGTTTGGTTACTTGGCTCCTGAGTATTTCATGCATGGCAAAGTGAGTGACAAAATCGACGTTTACGCATTTGGTGTGGTACTCCTTGAACTACTTTCAGGTAGAAAACCAATCACCGACAATTGTCCCAAGGGGCAGGAGAGCCTTGTCATGTGGGAAATGAAAGTTTCAGAATTACTAGATCCAAGCCTAGGCAACGACTACAACGACGATCAAATAGGTCGAATGATTTTGGCTGCTACTCTTTGTATTAGACGAGCACCGAGACTCCGTCCTCAAATCAGCCTGGTGTTGAAACTTCTCCAAGGGGATGAGGAAATAACAACATGGGCAAGACAACAAGTCGATGAATACGACGAATTCGACCCGAGTGATGGAGAACCTCTACCTACTAACATTCAATCACACCTTAACCTAGCCTTGCTTGGCTTGGAAGATGACTCACTTTCTCTTGGCAGTGGAATTCAAACCATCTCCATAGAGGACTACTTGCAGGGCAGATGCGACAGCCGCTCTTCAAGCTTTAACTGA 2187 44.58 MLLPDPAAGHGGSVVVVGVRMELQSRELLTWALVKVAQPGDCVIALHVLDSAAGNCFVLRPFDEGKLTLLSLVKSFDSMLSAYEGFCNLKQIDLKLKVCRGSPVRKIIRREVDSYGEASLILGTSKSHHRIRSSASVAKYCARKLPSRFSVLAVNSGKVIFQRLATFSTKGQSRDKDRDKNCAAIVEVANEAKADGLATNFIDSHIFLQKSDSGCNDKTERDSVEGTPSSLERNDSGTELVDELPEDIAVGNSLALVPFHKPQGSLTSNSIVSRESSHWKSSWPLLRRIFLSKQHVEKSSKKFSMFQGVLHVPNIQSSSSALVYPDQKQNNSDQDQGSTIDRECGAIVPYGSGYIFGSLPKEVLDLKDKYSSTCRLFTYEELLSATSNFMPENMVGKGGSSYVYRGLLPDGKEIAVKVLKPSENVLKEFVQEVGIIATSTHKNVISLMGFCLEDNNLLLVYGFLSRGSLEENLHGCKKDVNSFGWQERFKVAVGVAEALDYLHNCREEPVIHRDVKSSNILLSENFEPQLSDFGLASWASSCFQITCTDVAGTFGYLAPEYFMHGKVSDKIDVYAFGVVLLELLSGRKPITDNCPKGQESLVMWEMKVSELLDPSLGNDYNDDQIGRMILAATLCIRRAPRLRPQISLVLKLLQGDEEITTWARQQVDEYDEFDPSDGEPLPTNIQSHLNLALLGLEDDSLSLGSGIQTISIEDYLQGRCDSRSSSFN 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9746735 9750498 + CmoCh20G010560.1 Cmo20g01056 405373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01056 728 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Cmo20g01056 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Cmo20g01056 728 MobiDBLite consensus disorder prediction 214 236 - -
Cmo20g01056 728 Gene3D Phosphorylase Kinase; domain 1 360 463 - -
Cmo20g01056 728 Pfam Protein kinase domain 392 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01056 728 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 9 721 - -
Cmo20g01056 728 Gene3D - 15 201 - -
Cmo20g01056 728 CDD USP_Like 24 154 - -
Cmo20g01056 728 PANTHER OS01G0253100 PROTEIN 9 721 IPR045271 GO:0004714|GO:0006468
Cmo20g01056 728 Pfam Universal stress protein family 15 147 IPR006016 -
Cmo20g01056 728 Gene3D Transferase(Phosphotransferase) domain 1 464 673 - -
Cmo20g01056 728 ProSiteProfiles Protein kinase domain profile. 389 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo20g01056 728 SUPERFAMILY Protein kinase-like (PK-like) 371 653 IPR011009 -
Cmo20g01056 728 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 155 - -
Cmo20g01056 728 MobiDBLite consensus disorder prediction 214 228 - -
Cmo20g01056 728 SMART serkin_6 389 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01056 - - - csv:101216673 1207.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00650 Cmo20g01056 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02508 Cmo-Chr4:18481789 Cmo20g01056 Cmo-Chr20:9746735 0 dispersed
Cmo15g00658 Cmo-Chr15:3185027 Cmo20g01056 Cmo-Chr20:9746735 0 dispersed
Cmo20g00747 Cmo-Chr20:3738608 Cmo20g01056 Cmo-Chr20:9746735 4.45E-20 dispersed
Cmo20g01056 Cmo-Chr20:9746735 Cmo04g00925 Cmo-Chr4:4653727 1.04E-77 dispersed
Cmo02g00650 Cmo-Chr2:4047118 Cmo20g01056 Cmo-Chr20:9746735 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75173 PF00069 Pkinase 3.00E-41 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g01056 Cmo_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0