Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01059 ATGGATGAGCAGGCTTCGATAGCGAATAGCACAGACGATACAATCGTTTGCTATGCGCCTAGCATGATCACAACAAATGGGGTGTGGCAAGGCGATAACCCTCTTGATTATTCTCTCCCTCTCTTCATCTTACAGTTGACAATGGTGGTTGTGATGACTCGCACTTTGGTTTTCCTCTTAAAACCCTTACGTCAACCTCGAGTCATCTCTGAAATTTTGGGCGGAGTGATTTTGGGGCCTTCGGTTCTAGGGAGGAGTGCAGATTTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTTTGTTCTTGGTTGGTGTGGAGATGGATTTGTCAGTGATTCGTAGAACTGGGACGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCAGCATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAACAGATGAGGAATTGAACATCACTTACATTATGTTTCTTGGTATTGCACTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAACTCAGAGATTGGAAGGATGGCTATGGCCTCTGCCCTTTTCAATGACATGTGTGCTTGGGTTCTCTTAGCTATAGCCATAGCCTTATCTGAGAATGATACCTCATCTATGGCTTCCTTATGGGTTATATTGTCAAGTACAGGCTTTGTTTTGTTTTGTATCTTCATCGTTCGACCCTTGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTATCAGTGAGTTCTATATATGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCCTTGGAACACACTCGGTTTTTGGGGCTTTTGTGTTCGGGTTGGTTATCCCCAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTTCTCCCTCTCTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGAATCGCATAGAAGGATCAACCTCTTGGGTAGCTATTCTATCAATCACTCTCCTTGCTTTTGCTGGAAAAATCATTGGAACTCTCCTTGCTTCCATTTGTTATCAGATGTCCTATCGAGAAGGTGTCACCTTAGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAACGTCGGAAAGGACCAAAAGGTGTTGGATGATAAAACGTTCACAGTTATGGTGATTGTAGCCCTCTTTATGACTGGGATAATAACGCCTGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCGTATAAGAAACGAACAATCCAATCATCGAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACGATCATTAACCTCCTTGATGCCTCAAACCCAACCAAAAGATCCCCAATTTGCATTTACGTTCTACACTTGGTCGAACTCACAGGCCGAGCCTCGGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCCTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAGCAGCACGTCGAATGCATCTCAGTTCAGCCGCTCACAGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGTGTGGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCCACAAATCCAGCGTTTAGATTGGTAAACCAAAATGTGTTAGCCAATGCCCCTTGTTCCGTCGGAATCCTAGTGGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCGAACAAGGAATGTCACTATAACATAACCATGTTGTTCTTCGGTGGACAAGACGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCACGAGTAAGCTTAACCGTAATGCGATTCATCGCTGGAGAAGAAGCATCAGAACCAAACCAAGAAGATAACACACCAATAGCTTCAACTACAGAAACAGATGCCGACAGAGAGAGGAAACTGGACGAAGAACTCATAAAGGAATTCAGAACAAAAAGCTCAAATAACGAATCAATATCTTACAACGAGAAAGTCTCGAACAACGGCGAGGAGACAGTAGCAGGCATACGATCAATGGATGATGCTCACGACCTATACATCGTGGGGAGAGGAGAATCTCACATATCGCCTCTCACCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGACATCAGTTTTGGTAGTTCAACAGTTCGGAGCAGCAATCATGGCGGATCATGGAGACGAAGAAGATCCAAGCGAGCCCTTCCAAAGCTTGAGATCCACGAATTTGCGGCCACATACTCCTTCAGAACCTCAAAACATGTACAGTACATGA 2490 44.74 MDEQASIANSTDDTIVCYAPSMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRTLVFLLKPLRQPRVISEILGGVILGPSVLGRSADFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGTKAMAIAVAGMILPFSIGAAFSFQLHKTDEELNITYIMFLGIALSVTAFPVLARILAELKLINSEIGRMAMASALFNDMCAWVLLAIAIALSENDTSSMASLWVILSSTGFVLFCIFIVRPLISWMIRKTPEGESISEFYICLILTGVMISGFVTDALGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVNRIEGSTSWVAILSITLLAFAGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDKTFTVMVIVALFMTGIITPVVTIIYRPTRRFLPYKKRTIQSSKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVECISVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKECHYNITMLFFGGQDDREALSYAWRMSEHPRVSLTVMRFIAGEEASEPNQEDNTPIASTTETDADRERKLDEELIKEFRTKSSNNESISYNEKVSNNGEETVAGIRSMDDAHDLYIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAIMADHGDEEDPSEPFQSLRSTNLRPHTPSEPQNMYST 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9767041 9770956 + CmoCh20G010590.1 Cmo20g01059 405376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01059 829 PANTHER BNAA09G08340D PROTEIN 12 803 - -
Cmo20g01059 829 PANTHER CATION/H + ANTIPORTER 12 803 - -
Cmo20g01059 829 Gene3D - 41 438 IPR038770 -
Cmo20g01059 829 MobiDBLite consensus disorder prediction 797 829 - -
Cmo20g01059 829 Pfam Sodium/hydrogen exchanger family 49 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo20g01059 829 MobiDBLite consensus disorder prediction 669 692 - -
Cmo20g01059 829 MobiDBLite consensus disorder prediction 807 829 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01059 - - - csv:101219265 1427.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00731 Cmo-Chr1:3775956 Cmo20g01059 Cmo-Chr20:9767041 3.33E-130 dispersed
Cmo01g00736 Cmo-Chr1:3802176 Cmo20g01059 Cmo-Chr20:9767041 7.49E-180 dispersed
Cmo02g00632 Cmo-Chr2:3936732 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo02g00633 Cmo-Chr2:3939275 Cmo20g01059 Cmo-Chr20:9767041 2.43E-38 dispersed
Cmo04g01152 Cmo-Chr4:5880911 Cmo20g01059 Cmo-Chr20:9767041 2.55E-156 dispersed
Cmo07g01404 Cmo-Chr7:8064200 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo08g00509 Cmo-Chr8:3190323 Cmo20g01059 Cmo-Chr20:9767041 7.57E-112 dispersed
Cmo11g01599 Cmo-Chr11:11457104 Cmo20g01059 Cmo-Chr20:9767041 2.78E-173 dispersed
Cmo13g00018 Cmo-Chr13:170469 Cmo20g01059 Cmo-Chr20:9767041 1.47E-148 dispersed
Cmo14g00746 Cmo-Chr14:3811969 Cmo20g01059 Cmo-Chr20:9767041 1.92E-173 dispersed
Cmo16g00077 Cmo-Chr16:360890 Cmo20g01059 Cmo-Chr20:9767041 1.84E-123 dispersed
Cmo16g00619 Cmo-Chr16:3024313 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo16g00620 Cmo-Chr16:3029204 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo17g00938 Cmo-Chr17:8326977 Cmo20g01059 Cmo-Chr20:9767041 1.17E-112 dispersed
Cmo19g00383 Cmo-Chr19:3792457 Cmo20g01059 Cmo-Chr20:9767041 2.22E-113 dispersed
Cmo20g01059 Cmo-Chr20:9767041 Cmo04g00757 Cmo-Chr4:3766475 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1313 . . . . . . . . . Cmo20g01059 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1271 . . . . . . . . . . . . . . . . . Cma20g01053 . . . Cpe16g00093 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo20g01059 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Cmo02g00632 . 1 691 Antiporter Super Family AT2G13620 71.0 4.7e-284 974.5
Cmo03g00449 . 75 843 Antiporter Super Family AT3G53720 66.7 8.0e-278 953.7
Cmo07g01023 . 76 755 Antiporter Super Family AT3G53720 57.6 3.8e-219 758.8
Cmo16g00620 . 83 779 Antiporter Super Family AT3G53720 50.7 2.5e-186 649.8
Cmo16g00617 . 83 774 Antiporter Super Family AT3G53720 50.3 1.5e-183 640.6
Cmo04g00757 . 1695 2378 Antiporter Super Family AT3G53720 50.1 1.7e-182 637.1
Cmo16g00620 . 1 797 Antiporter Super Family AT5G41610 68.4 1.2e-305 1046.2
Cmo04g00757 . 838 1626 Antiporter Super Family AT5G41610 66.8 3.0e-299 1025.0
Cmo16g00617 . 1 777 Antiporter Super Family AT5G41610 66.5 9.9e-295 1010.0
Cmo16g00619 . 3 706 Antiporter Super Family AT5G41610 66.9 5.3e-264 907.9
Cmo03g00449 . 8 818 Antiporter Super Family AT5G41610 51.3 6.3e-209 724.9
Cmo04g00757 . 1623 2378 Antiporter Super Family AT4G23700 67.6 3.3e-290 995.0
Cmo16g00617 . 11 796 Antiporter Super Family AT4G23700 64.4 3.4e-287 984.9
Cmo16g00620 . 1 779 Antiporter Super Family AT4G23700 63.8 6.5e-278 954.1
Cmo16g00619 . 3 723 Antiporter Super Family AT4G23700 63.6 1.6e-260 896.3
Cmo04g00757 . 1621 2378 Antiporter Super Family AT3G17630 64.2 3.3e-274 941.8
Cmo16g00617 . 4 796 Antiporter Super Family AT3G17630 62.7 2.8e-273 938.7
Cmo16g00620 . 5 779 Antiporter Super Family AT3G17630 64.0 2.9e-270 928.7
Cmo16g00619 . 3 704 Antiporter Super Family AT3G17630 63.9 4.9e-246 848.2
Cmo03g00449 . 2 808 Antiporter Super Family AT3G17630 51.6 1.7e-206 716.8
Cmo16g00617 . 3 777 Antiporter Super Family AT1G64170 57.9 2.0e-239 826.2
Cmo04g00757 . 1623 2378 Antiporter Super Family AT1G64170 58.0 1.1e-234 810.4
Cmo16g00620 . 10 789 Antiporter Super Family AT1G64170 56.3 1.7e-230 796.6
Cmo16g00619 . 3 706 Antiporter Super Family AT1G64170 58.0 1.0e-214 744.2
Cmo20g01059 . 10 809 Antiporter Super Family AT2G13620 71.2 0.0e+00 1132.1
Cmo02g00632 . 1 691 Antiporter Super Family AT2G13620 71.0 4.7e-284 974.5
Cmo16g00617 . 3 777 Antiporter Super Family AT1G64170 57.9 2.0e-239 826.2
Cmo04g00757 . 1623 2378 Antiporter Super Family AT1G64170 58.0 1.1e-234 810.4
Cmo16g00620 . 10 789 Antiporter Super Family AT1G64170 56.3 1.7e-230 796.6
Cmo16g00619 . 3 706 Antiporter Super Family AT1G64170 58.0 1.0e-214 744.2
Cmo04g00757 . 1623 2378 Antiporter Super Family AT4G23700 67.6 3.3e-290 995.0
Cmo16g00617 . 11 796 Antiporter Super Family AT4G23700 64.4 3.4e-287 984.9
Cmo16g00620 . 1 779 Antiporter Super Family AT4G23700 63.8 6.5e-278 954.1
Cmo16g00619 . 3 723 Antiporter Super Family AT4G23700 63.6 1.6e-260 896.3
Cmo16g00620 . 1 797 Antiporter Super Family AT5G41610 68.4 1.2e-305 1046.2
Cmo04g00757 . 838 1626 Antiporter Super Family AT5G41610 66.8 3.0e-299 1025.0
Cmo16g00617 . 1 777 Antiporter Super Family AT5G41610 66.5 9.9e-295 1010.0
Cmo16g00619 . 3 706 Antiporter Super Family AT5G41610 66.9 5.3e-264 907.9
Cmo03g00449 . 8 818 Antiporter Super Family AT5G41610 51.3 6.3e-209 724.9
Cmo04g00757 . 1621 2378 Antiporter Super Family AT3G17630 64.2 3.3e-274 941.8
Cmo16g00617 . 4 796 Antiporter Super Family AT3G17630 62.7 2.8e-273 938.7
Cmo16g00620 . 5 779 Antiporter Super Family AT3G17630 64.0 2.9e-270 928.7
Cmo16g00619 . 3 704 Antiporter Super Family AT3G17630 63.9 4.9e-246 848.2
Cmo03g00449 . 2 808 Antiporter Super Family AT3G17630 51.6 1.7e-206 716.8
Cmo03g00449 . 75 843 Antiporter Super Family AT3G53720 66.7 8.0e-278 953.7
Cmo07g01023 . 76 755 Antiporter Super Family AT3G53720 57.6 3.8e-219 758.8
Cmo16g00620 . 83 779 Antiporter Super Family AT3G53720 50.7 2.5e-186 649.8
Cmo16g00617 . 83 774 Antiporter Super Family AT3G53720 50.3 1.5e-183 640.6
Cmo04g00757 . 1695 2378 Antiporter Super Family AT3G53720 50.1 1.7e-182 637.1
Cmo17g00938 CST 47 790 Antiporter Super Family AT3G52080 54.1 1.1e-232 803.9
Cmo08g00509 CST 47 790 Antiporter Super Family AT3G52080 54.0 7.1e-229 791.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g01059 Cmo_Chr20 FPKM 6.918692 8.234202 9.433134 8.593666 5.183831 5.569057 5.49984 18.947001 18.361773 20.520033