Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01059 ATGGATGAGCAGGCTTCGATAGCGAATAGCACAGACGATACAATCGTTTGCTATGCGCCTAGCATGATCACAACAAATGGGGTGTGGCAAGGCGATAACCCTCTTGATTATTCTCTCCCTCTCTTCATCTTACAGTTGACAATGGTGGTTGTGATGACTCGCACTTTGGTTTTCCTCTTAAAACCCTTACGTCAACCTCGAGTCATCTCTGAAATTTTGGGCGGAGTGATTTTGGGGCCTTCGGTTCTAGGGAGGAGTGCAGATTTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTTTGTTCTTGGTTGGTGTGGAGATGGATTTGTCAGTGATTCGTAGAACTGGGACGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTCAGCATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAACAGATGAGGAATTGAACATCACTTACATTATGTTTCTTGGTATTGCACTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAACTCAGAGATTGGAAGGATGGCTATGGCCTCTGCCCTTTTCAATGACATGTGTGCTTGGGTTCTCTTAGCTATAGCCATAGCCTTATCTGAGAATGATACCTCATCTATGGCTTCCTTATGGGTTATATTGTCAAGTACAGGCTTTGTTTTGTTTTGTATCTTCATCGTTCGACCCTTGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTATCAGTGAGTTCTATATATGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCCTTGGAACACACTCGGTTTTTGGGGCTTTTGTGTTCGGGTTGGTTATCCCCAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTCTTCTCCCTCTCTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGAATCGCATAGAAGGATCAACCTCTTGGGTAGCTATTCTATCAATCACTCTCCTTGCTTTTGCTGGAAAAATCATTGGAACTCTCCTTGCTTCCATTTGTTATCAGATGTCCTATCGAGAAGGTGTCACCTTAGGCTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAACGTCGGAAAGGACCAAAAGGTGTTGGATGATAAAACGTTCACAGTTATGGTGATTGTAGCCCTCTTTATGACTGGGATAATAACGCCTGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCGTATAAGAAACGAACAATCCAATCATCGAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACGATCATTAACCTCCTTGATGCCTCAAACCCAACCAAAAGATCCCCAATTTGCATTTACGTTCTACACTTGGTCGAACTCACAGGCCGAGCCTCGGCCATGCTCATTGTCCACAACACCAGAAAATCAGGTCGCCCTGCCCTAAATCGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAGCAGCACGTCGAATGCATCTCAGTTCAGCCGCTCACAGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGTGTGGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTGGATGGAGGAATGGAAGCCACAAATCCAGCGTTTAGATTGGTAAACCAAAATGTGTTAGCCAATGCCCCTTGTTCCGTCGGAATCCTAGTGGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCGAACAAGGAATGTCACTATAACATAACCATGTTGTTCTTCGGTGGACAAGACGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCACGAGTAAGCTTAACCGTAATGCGATTCATCGCTGGAGAAGAAGCATCAGAACCAAACCAAGAAGATAACACACCAATAGCTTCAACTACAGAAACAGATGCCGACAGAGAGAGGAAACTGGACGAAGAACTCATAAAGGAATTCAGAACAAAAAGCTCAAATAACGAATCAATATCTTACAACGAGAAAGTCTCGAACAACGGCGAGGAGACAGTAGCAGGCATACGATCAATGGATGATGCTCACGACCTATACATCGTGGGGAGAGGAGAATCTCACATATCGCCTCTCACCGCTGGACTCACAGACTGGAGCGAATGTCCAGAGCTTGGAGCAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGACATCAGTTTTGGTAGTTCAACAGTTCGGAGCAGCAATCATGGCGGATCATGGAGACGAAGAAGATCCAAGCGAGCCCTTCCAAAGCTTGAGATCCACGAATTTGCGGCCACATACTCCTTCAGAACCTCAAAACATGTACAGTACATGA 2490 44.74 MDEQASIANSTDDTIVCYAPSMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRTLVFLLKPLRQPRVISEILGGVILGPSVLGRSADFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGTKAMAIAVAGMILPFSIGAAFSFQLHKTDEELNITYIMFLGIALSVTAFPVLARILAELKLINSEIGRMAMASALFNDMCAWVLLAIAIALSENDTSSMASLWVILSSTGFVLFCIFIVRPLISWMIRKTPEGESISEFYICLILTGVMISGFVTDALGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVNRIEGSTSWVAILSITLLAFAGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDKTFTVMVIVALFMTGIITPVVTIIYRPTRRFLPYKKRTIQSSKPDSEFRVLVCIHTPRNVPTIINLLDASNPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVECISVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKECHYNITMLFFGGQDDREALSYAWRMSEHPRVSLTVMRFIAGEEASEPNQEDNTPIASTTETDADRERKLDEELIKEFRTKSSNNESISYNEKVSNNGEETVAGIRSMDDAHDLYIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAIMADHGDEEDPSEPFQSLRSTNLRPHTPSEPQNMYST 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9767041 9770956 + CmoCh20G010590.1 Cmo20g01059 405376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01059 829 PANTHER BNAA09G08340D PROTEIN 12 803 - -
Cmo20g01059 829 PANTHER CATION/H + ANTIPORTER 12 803 - -
Cmo20g01059 829 Gene3D - 41 438 IPR038770 -
Cmo20g01059 829 MobiDBLite consensus disorder prediction 797 829 - -
Cmo20g01059 829 Pfam Sodium/hydrogen exchanger family 49 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo20g01059 829 MobiDBLite consensus disorder prediction 669 692 - -
Cmo20g01059 829 MobiDBLite consensus disorder prediction 807 829 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00731 Cmo-Chr1:3775956 Cmo20g01059 Cmo-Chr20:9767041 3.33E-130 dispersed
Cmo01g00736 Cmo-Chr1:3802176 Cmo20g01059 Cmo-Chr20:9767041 7.49E-180 dispersed
Cmo02g00632 Cmo-Chr2:3936732 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo02g00633 Cmo-Chr2:3939275 Cmo20g01059 Cmo-Chr20:9767041 2.43E-38 dispersed
Cmo04g01152 Cmo-Chr4:5880911 Cmo20g01059 Cmo-Chr20:9767041 2.55E-156 dispersed
Cmo07g01404 Cmo-Chr7:8064200 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo08g00509 Cmo-Chr8:3190323 Cmo20g01059 Cmo-Chr20:9767041 7.57E-112 dispersed
Cmo11g01599 Cmo-Chr11:11457104 Cmo20g01059 Cmo-Chr20:9767041 2.78E-173 dispersed
Cmo13g00018 Cmo-Chr13:170469 Cmo20g01059 Cmo-Chr20:9767041 1.47E-148 dispersed
Cmo14g00746 Cmo-Chr14:3811969 Cmo20g01059 Cmo-Chr20:9767041 1.92E-173 dispersed
Cmo16g00077 Cmo-Chr16:360890 Cmo20g01059 Cmo-Chr20:9767041 1.84E-123 dispersed
Cmo16g00619 Cmo-Chr16:3024313 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo16g00620 Cmo-Chr16:3029204 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo17g00938 Cmo-Chr17:8326977 Cmo20g01059 Cmo-Chr20:9767041 1.17E-112 dispersed
Cmo19g00383 Cmo-Chr19:3792457 Cmo20g01059 Cmo-Chr20:9767041 2.22E-113 dispersed
Cmo20g01059 Cmo-Chr20:9767041 Cmo04g00757 Cmo-Chr4:3766475 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01059 - - csv:101219265 1427.92