Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01073 ATGTCTCAGAGCACTTCTCGTTTCTCTTTAATTCTCAGAAACTGTGCTCGTCTTAATGAAGTTGCTCAAGCAAAGCAAGCACACGCGCAAATCCTAATTCATGGTTTGATTCCACATTTAACTCTTGTGACAGATCTCCTTTTGGTGTATTGCAAATGTGGGGTTCTGCATGACGCCCGCAAGGTGTTTGACAAAATGACTCAGAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTACATTTTGATGCAATTAATGTGTTTAACGAGTTTAGGGGACTTGGTTTTCTGCCTGATCACTATACTTTGCCCCAGATGTTTAAGGTTAGTGTTGGTATAGGAGATGTTTATATGGGGAAGAGACTTCATTGTTGGACAATTAAGCTGGGGTTTGAAGGATATGTTGTGGTAGCCAGTACGGTTTTGGATTTCTATGCCAAATATGGGGTTGTGGGAGATGCTAAGAAGGTGTTTGATAATATGATTTTGAAAGATACAATTTCTTGGAACTCAATGATTTCTGGGTATGGGAGGGCTGGGCTTTATGGGGATGCATTGGATTGTTTCAAGCGCATGCTCTTTGAAGGAGTGAAGATGGATATCATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGCCAAGAAATTCATTGCTTAGTTTTGAAGAGTCAATTATTTGTTGCTGATGTTGCTATTGGGAACTCATTGATTGATATGTATGCAAAGTGTGGAAGCCTGTTTGATGCTGAAGAGGTCTTTAGGAATATGAGTAGCACGAATATTGTTACATGGACAACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGCACTGTTTAACAAAATGAAGGATTGTGGAATCCAACCCAATTCTGTAACACTAACAGCCATTTTGGCTAGTTGCAGTCACGCAGGTTACATCAATGAAGGGTGGAGAATTTTCAAGTCTTTTGTTTCAGATTATGAGGTTGAACCGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTATGTTGATAATAAATATGAAACACACAGCCGCAGCAAGCGTTTGGGGTGCTCTGCTTTCTGGTTGTATGATGCACAAGAACATTGAGATAGGAGAAATTGCAGCTAACCGGCTTTTCAAGTTGGAACCTAAGAATCCAAGCAATTTTATAGCCTTGATTGGTATATATGAATCTCTTGGAATGTCGCATGGCGTTTCGTTGACTAGAGGGAAGATGAGAGAGCTGGGTTTGACGAAACTCCCTGGTTGTAGCTGGATAACCATTGAAGGAGTTGTACATAAATTCTATGGAGGGGACAAGTCTCATCCTTTGGGGTTGAGAATATTTGAAACGTTGAGTGCAGTAAAACAAGCCAGTACGCCACTATGTTATATCTCCACACAACCTGTTGAGATTAGCAGTACAAGCGGTATTAAATCGAACCCAAGGAGCGTGCAAGAGCATCTATATCTTCGACACCACGCCCATCATAAACACACCATGCACATCGTTAACCCACTTCAAACTCCGATACCAAGGGACAGGGGGACTTGGATTTTCTTAGTTGGAAATTTGCTTCAACCCCAAGGTATTTCTTCAACTTCTTCAAGAACAAAAACTTACTTCTATCGATGA 1710 40.94 MSQSTSRFSLILRNCARLNEVAQAKQAHAQILIHGLIPHLTLVTDLLLVYCKCGVLHDARKVFDKMTQRNMHSWNILIASYVHSSLHFDAINVFNEFRGLGFLPDHYTLPQMFKVSVGIGDVYMGKRLHCWTIKLGFEGYVVVASTVLDFYAKYGVVGDAKKVFDNMILKDTISWNSMISGYGRAGLYGDALDCFKRMLFEGVKMDIMTIPSVLNACGGEGDLRKGQEIHCLVLKSQLFVADVAIGNSLIDMYAKCGSLFDAEEVFRNMSSTNIVTWTTMISCYGAHGKGEKSLALFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRIFKSFVSDYEVEPTVEHYACVVDLLSRFGFLQEAFMLIINMKHTAAASVWGALLSGCMMHKNIEIGEIAANRLFKLEPKNPSNFIALIGIYESLGMSHGVSLTRGKMRELGLTKLPGCSWITIEGVVHKFYGGDKSHPLGLRIFETLSAVKQASTPLCYISTQPVEISSTSGIKSNPRSVQEHLYLRHHAHHKHTMHIVNPLQTPIPRDRGTWIFLVGNLLQPQGISSTSSRTKTYFYR 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9924630 9928761 + CmoCh20G010730.1 Cmo20g01073 405390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01073 569 Pfam PPR repeat 46 70 IPR002885 -
Cmo20g01073 569 Pfam PPR repeat 247 271 IPR002885 -
Cmo20g01073 569 Pfam PPR repeat 73 102 IPR002885 -
Cmo20g01073 569 Gene3D Tetratricopeptide repeat domain 247 423 IPR011990 GO:0005515
Cmo20g01073 569 Pfam PPR repeat family 273 319 IPR002885 -
Cmo20g01073 569 Pfam PPR repeat family 170 217 IPR002885 -
Cmo20g01073 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cmo20g01073 569 PANTHER OS11G0213500 PROTEIN 3 488 - -
Cmo20g01073 569 Gene3D Tetratricopeptide repeat domain 122 231 IPR011990 GO:0005515
Cmo20g01073 569 Gene3D Tetratricopeptide repeat domain 2 121 IPR011990 GO:0005515
Cmo20g01073 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Cmo20g01073 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Cmo20g01073 569 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Cmo20g01073 569 TIGRFAM PPR: pentatricopeptide repeat domain 247 275 IPR002885 -
Cmo20g01073 569 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Cmo20g01073 569 TIGRFAM PPR: pentatricopeptide repeat domain 72 105 IPR002885 -
Cmo20g01073 569 PANTHER OS07G0578800 PROTEIN-RELATED 3 488 IPR045215 GO:0003723|GO:0009451
Cmo20g01073 569 Pfam E motif 390 451 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01073 - - - csv:101220461 827.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g01073 Cmo-Chr20:9924630 Cmo13g00347 Cmo-Chr13:4436517 6.18E-35 dispersed
Cmo20g01073 Cmo-Chr20:9924630 Cmo14g00772 Cmo-Chr14:3921926 3.95E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23