Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01074 ATGCCCAATCCTCTCCCCAGAACAACCCCATTTCCATTTCCGTTTCAATTCAACGCTGCCAAATCCACTTTCCTCTTCCTCTCCATGGCCGCCCTCTCCTTCCTCTCCTTCCTCTCCCTCTTCTTCTTCCTCTCCCTCTCCTCCGCCGTCCACCACCGCCACCACCACCACCACCTCCCATCCCATTTCACCAACTCTCCCTCCTCCGAGGAAACATTCCGTGCCTGCAAGGCCACACGTTTCCCCGACCAATGCGGATCTTCCCTTTCTCATTCCCCTTCTCTTCCTCCCAATCCCACCACTCTCCAGATCATTCAATCCGCCATCGCCGTCTCCTCTGACGGTCTAGCCTCCGCGAAGTCCATGGTCAAGCAGATTCTCGATTCCTCTACCGATAGTCCGAATCGAACCACCGCTGCTAAGAATTGCCTCGAGGTTTTGCGGTTTTCCGAGTATCGAATTTCTCTTACCAACGATGCTGTTCGGCGAGGTCGAACCAAGGACGCGCGCGCTTGGATGAGCGCGTCTCTTCTCTACCATTACGATTGCTGGTCCGCGCTTAAGTACGCCAACGATACTCAATCTGTTAACAAAACCATGGCGTTTCTTGACTCTCTCATTGGCCTCACCAGTAACGCCCTTAGTATGTTGGCGGCTTACGACATTTCTGGTAACGATACGGCGGCGTGGACGCCGCCGAGGACTGAGCGCGATGGGTTCTGGGAAGGTAGTAGCGGTGGATCTGGGTTAGGGTTTAGCGGCGGGTTCCCATCGAAGGTAGATGCTAGCGCGACGGTGTGCAAAGACGGTGCCGGGGGATGTTATAAAACTGTTCAGGAAGCTGTGAACGCGGCGCCGGATAATGCGATGGGGAAGCGATTTGTGATTCATATTAAGGAAGGCGTTTATGATGAAATCGTGAGGGTTCCGTTGGAGAAGAAGAATGTGGTGTTCTTGGGAGATGGGATGGGGAAAACGGTGATCACGGGGTCTTTGAATGTCGGCCAGCCTGGGATTTCCACTTACAACACTGCCACCGTCGGGGTAGTTGGTGATGGATTCATGGCCAGTGGTCTGACCATTCAAAACACAGCAGGCCCTGATGCCCATCAGGCTGTGGCGTTTAGATCAGACAGTGATCTCTCGGTGATTCAAGACTGTGAGTTTCTAGGCAACCAAGACACTCTCTATGCTCACTCCCTCCGCCAATTCTACAAATCTTGCAAGATTCAAGGCAACGTAGATTTCATCTTTGGAAACTCAGCTTCCGTCTTCCAGGACTGCGAGATCCTTGTCCGTCCTCGACAGCTCAAGCCCGAGAAAGGCGAGAACAACGCCGTCACTGCTCACGGCAGGACCGACCCGGCTCAAACAACTGGTTTCGTGTTCCAGAACTGTCTCGTAAATGGCACTCAGGAGTACATGGCATTGTACTACAGCAAGCCTAAAGTGCACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTACTCGAGGACGGTTTTCATACATTGTAATCTCGAGGCTCTTGTTTCTCCTGCGGGGTGGATGCCGTGGACTGGGGACTTTGCTTTGAAAACTCTTTACTATGGGGAGTTTGAGAACTCCGGGACGGGGTCCAAAACCTCGGAACGAGTCGAGTGGAGTAGTCAAATACCAGCACAACATGTTTATAGTTACTCTGTTCAGAATTTCATTCAGGGAGACGAATGGATTCCTTCATCGCAGTCTTCTGAAGAATCAAAAACGATAAATTAG 1755 52.08 MPNPLPRTTPFPFPFQFNAAKSTFLFLSMAALSFLSFLSLFFFLSLSSAVHHRHHHHHLPSHFTNSPSSEETFRACKATRFPDQCGSSLSHSPSLPPNPTTLQIIQSAIAVSSDGLASAKSMVKQILDSSTDSPNRTTAAKNCLEVLRFSEYRISLTNDAVRRGRTKDARAWMSASLLYHYDCWSALKYANDTQSVNKTMAFLDSLIGLTSNALSMLAAYDISGNDTAAWTPPRTERDGFWEGSSGGSGLGFSGGFPSKVDASATVCKDGAGGCYKTVQEAVNAAPDNAMGKRFVIHIKEGVYDEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASVFQDCEILVRPRQLKPEKGENNAVTAHGRTDPAQTTGFVFQNCLVNGTQEYMALYYSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVSPAGWMPWTGDFALKTLYYGEFENSGTGSKTSERVEWSSQIPAQHVYSYSVQNFIQGDEWIPSSQSSEESKTIN 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 9934282 9937224 + CmoCh20G010740.1 Cmo20g01074 405391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01074 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 219 IPR035513 -
Cmo20g01074 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 217 IPR035513 -
Cmo20g01074 584 Pfam Pectinesterase 264 568 IPR000070 GO:0030599|GO:0042545
Cmo20g01074 584 Gene3D - 257 580 IPR012334 -
Cmo20g01074 584 CDD PMEI-like_3 75 221 - -
Cmo20g01074 584 SUPERFAMILY Pectin lyase-like 262 573 IPR011050 -
Cmo20g01074 584 Pfam Plant invertase/pectin methylesterase inhibitor 75 216 IPR006501 GO:0004857
Cmo20g01074 584 PANTHER PECTINESTERASE 23 574 - -
Cmo20g01074 584 PANTHER PECTINESTERASE 23 574 - -
Cmo20g01074 584 SMART PMEI_2 67 216 IPR006501 GO:0004857
Cmo20g01074 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 217 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo20g01074 Cmo-Chr20:9934282 Cmo02g00998 Cmo-Chr2:6110312 4.49E-103 dispersed
Cmo20g01074 Cmo-Chr20:9934282 Cmo04g00349 Cmo-Chr4:1702527 3.16E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01074 - - csv:101221165 937.176