Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01080 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGTGATAATGGAACCGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACCGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAGAAGATTTGGCATCACACTTTCTACAATGAGCTACGTGTTGCACCAGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGGACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCGGGTCGTGATCTAACTGATGCTTTAATGAAGATTCTCACCGAGAGAGGGTACATGTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATGAAAGAGAAGCTGGCTTATGTTGCACTTGACTACGAGCAGGAACTCGAGACTGCCAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACTATTGGAGCTGAGAGATTCCGATGCCCTGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACTTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGCAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATTGCCGACCGAATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTCGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCGCTCAGCACCTTCCAGCAGGTGAGACACTCCCTCCTTTCACTCTTTACCTCTCTTTTGGTTCCATTTCTTGCACATATGTGGATTTCGAAGGGCGAGTATGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAG 1191 47.36 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVRHSLLSLFTSLLVPFLAHMWISKGEYDESGPSIVHRKCF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10245769 10249274 + CmoCh20G010800.1 Cmo20g01080 405397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01080 396 PRINTS Actin signature 63 85 IPR004000 -
Cmo20g01080 396 PRINTS Actin signature 28 37 IPR004000 -
Cmo20g01080 396 PRINTS Actin signature 51 62 IPR004000 -
Cmo20g01080 396 PRINTS Actin signature 117 130 IPR004000 -
Cmo20g01080 396 PRINTS Actin signature 142 161 IPR004000 -
Cmo20g01080 396 PRINTS Actin signature 238 254 IPR004000 -
Cmo20g01080 396 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo20g01080 396 Gene3D - 140 340 - -
Cmo20g01080 396 Pfam Actin 5 357 IPR004000 -
Cmo20g01080 396 Gene3D - 10 359 - -
Cmo20g01080 396 ProSitePatterns Actins signature 2. 377 385 IPR004001 -
Cmo20g01080 396 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo20g01080 396 PANTHER ACTIN 1 395 - -
Cmo20g01080 396 SMART actin_3 7 396 IPR004000 -
Cmo20g01080 396 Gene3D - 360 396 - -
Cmo20g01080 396 PANTHER ACTIN 1 395 IPR004000 -
Cmo20g01080 396 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmo20g01080 396 SUPERFAMILY Actin-like ATPase domain 149 396 IPR043129 -
Cmo20g01080 396 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo20g01080 396 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00807 Cmo20g01080 CCT
Cmo02g00620 Cmo20g01080 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01301 Cmo-Chr5:10107046 Cmo20g01080 Cmo-Chr20:10245769 4.82E-44 dispersed
Cmo07g00807 Cmo-Chr7:3719562 Cmo20g01080 Cmo-Chr20:10245769 0 dispersed
Cmo20g01080 Cmo-Chr20:10245769 Cmo06g00095 Cmo-Chr6:553644 0 dispersed
Cmo02g00620 Cmo-Chr2:3851300 Cmo20g01080 Cmo-Chr20:10245769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01080 K10355 - csv:101220617 746.503