Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01084 ATGCGCGAAATTTCGCCTTCACCGGAAATTTCTACCGCCGTCGTGAGCCGTGCCTCTGAGGAGGAGGCTGACCGGAATTGGGCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCGTTACTGAAGGTGCGGTCTAGAATGGACTCTGCGTTTAGGGATTCGAGCATTAAAGCTCCTCTTTGGGAAGAAGTATCCAGGAAATTAGCTGAGCTTGGGTATAATAGAAGTGCGAAGAAGTGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGCAGATCAGGCAAACAGAATGGAAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATCATCCATTGCTTCCCTCTCAAGCTGATTCAAAGGAAGAAATCCCAAACAAAATTGTTCATAATGCAATTCCATGTTCCATAGTAAACCCGGATTCGAATTTCGTTGAAACTACCACCACTTTGATATCGATGTCGACCACATCTTGCTCGAGTAAGGAGTCGGGTGGGACGATGAGGAAGAAGAAGAAGAAGAGGAAGTTCGTGGAGTTTTTTGGGAGGTTAATGAAGGAGGTGATTGAAAAACAGGAGAAATTGCAAAAGAAGCTTGTGGAGGCTTTGGAGAAATGTGAAGAAGAGAGGTTAGCTAGGGAAGAAGAATGGAAGATGCAAGAATTAGCTCGCATCAAGAACGAGCGAGAGCGTTTTAATCACCAGAGATCCATTGCAGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGGCGTTTTCGGAACAGGTCGGCACGGTGCAGTTTCCCGAAAGCTTGATTCTGATGGAGAATTTGACTGGCAGGGAAGATGATGGTAATGTTGACAGAAATACAAGTACTCGAGAGAACGGAAACGATGGTAATTCGAATCAGATTAGCTCGTCTCGATGGCCGAAAGACGAGATCGATGCTCTGATTCAGCTTAAGACTAGCCTGCAGATGAAGTACCAAGAAAATGGCCCTAAAGGTCCTCTTTGGGAGGAAATATCATTGGCCATGAAGAAACTTGGGTATGATAGAAATGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAATACTTCAAGAAAGTAAAGGAAAGCAACAAAAAGCGACCCGAGGACTCGAAGACATGTTCGTATTTCCAGCAGCTCGACGCATTGTACAAACAGAAATCCAAGAAAGTCGTCGACAATCATCCGAATCACGAACTGAAACCCGAGGAACTATTGATGCACATGATGGGCAGCCAAGAAGAAAGCCACCAACCCGAATCAGCAACAGACGACGGCAAAGCTGAGAATGCGGATCAGAACCAAGAAGACGAAGACGATAACAATGACGAAGACGAATATTATTACATTGTAGCCGACAACAACAGCAATCAAGTGGAAGTAGGCAGCTGA 1434 44.35 MREISPSPEISTAVVSRASEEEADRNWAGNRWPREETMALLKVRSRMDSAFRDSSIKAPLWEEVSRKLAELGYNRSAKKCKEKFENIYKYHKRTKDGRSGKQNGKNYRYFEQLEALDNHPLLPSQADSKEEIPNKIVHNAIPCSIVNPDSNFVETTTTLISMSTTSCSSKESGGTMRKKKKKRKFVEFFGRLMKEVIEKQEKLQKKLVEALEKCEEERLAREEEWKMQELARIKNERERFNHQRSIAAAKDAAVLSFLKAFSEQVGTVQFPESLILMENLTGREDDGNVDRNTSTRENGNDGNSNQISSSRWPKDEIDALIQLKTSLQMKYQENGPKGPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCSYFQQLDALYKQKSKKVVDNHPNHELKPEELLMHMMGSQEESHQPESATDDGKAENADQNQEDEDDNNDEDEYYYIVADNNSNQVEVGS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10264768 10267385 + CmoCh20G010840.1 Cmo20g01084 405401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01084 477 SMART sant 308 370 IPR001005 -
Cmo20g01084 477 SMART sant 28 90 IPR001005 -
Cmo20g01084 477 MobiDBLite consensus disorder prediction 1 30 - -
Cmo20g01084 477 ProSiteProfiles Myb-like domain profile. 304 368 IPR001005 -
Cmo20g01084 477 Coils Coil 193 220 - -
Cmo20g01084 477 MobiDBLite consensus disorder prediction 445 461 - -
Cmo20g01084 477 PANTHER - 17 471 - -
Cmo20g01084 477 MobiDBLite consensus disorder prediction 281 311 - -
Cmo20g01084 477 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 17 471 - -
Cmo20g01084 477 Pfam Myb/SANT-like DNA-binding domain 310 397 IPR044822 -
Cmo20g01084 477 Pfam Myb/SANT-like DNA-binding domain 30 116 IPR044822 -
Cmo20g01084 477 MobiDBLite consensus disorder prediction 293 311 - -
Cmo20g01084 477 ProSiteProfiles Myb-like domain profile. 30 88 IPR001005 -
Cmo20g01084 477 MobiDBLite consensus disorder prediction 423 477 - -
Cmo20g01084 477 Gene3D - 32 93 - -
Cmo20g01084 477 Gene3D - 312 373 - -
Cmo20g01084 477 CDD GT1 30 95 - -
Cmo20g01084 477 CDD GT1 310 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01084 - - - csv:101215942 703.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g00617 Cmo20g01084 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00975 Cmo-Chr2:6010106 Cmo20g01084 Cmo-Chr20:10264768 2.65E-21 dispersed
Cmo09g01085 Cmo-Chr9:5914416 Cmo20g01084 Cmo-Chr20:10264768 1.34E-21 dispersed
Cmo09g01086 Cmo-Chr9:5930480 Cmo20g01084 Cmo-Chr20:10264768 3.19E-117 dispersed
Cmo15g01408 Cmo-Chr15:9597606 Cmo20g01084 Cmo-Chr20:10264768 6.55E-21 dispersed
Cmo02g00617 Cmo-Chr2:3835565 Cmo20g01084 Cmo-Chr20:10264768 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11785 PF13837 Myb_DNA-bind_4 1.80E-20 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g01084 Cmo_Chr20 FPKM 6.076294 6.180311 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0