Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo20g01088 | ATGAACTTACACAATTTGAGGAAAATGGAAAAGAAACCTTATTTTGCTGTGTTGCTCAGACATAGCATTTATGCAGGAATGTTTCTGCTCTCCAAAGCTGCCTTTGATGGCGGAATGAACAACTTTATCTTTGTTTTCTATAGGCAAGCCATAGCCACACTGTTCTTGCTACCCATCGCTTTGTATTTTGAATGGAAAACTGCGCCTCCCCTCTCATTTGTAACCTTCGCCAAGATCTTTATGCTTTCTTTATTTGGGATAACCATATGTCTTGATCTTCAAGGGGTTGCTCTTATTTATACATCAGCAAGTTTAGCTGCAGCAACTATAAATGCTATTCCTGTCATTACCTTTCTTTTCGCCCTTCTATTCAGGGTGGAGGTGTTGAGGCTAAAGTCAACAGTAGGATTAGCAAAGGTTGGAGGAATAGTATTTTGTATGGGCGGTGTGTTGGTTTTGGTGTTCTACAAAGGCCCTCAACTCACATTCTTTAACAATCACCATCTTTTTTCTATACACAAACATCATCAAAATCCACTTCATGTTGCTTCAACCCAAACTTGGATTAAGGGTTGCTTCCTAATGATGGCTTCAAATACCTTGTGGGCTTTATCACTTGTCCTTCAGGCGTTTGTACTGAAAAGTTATCCTTCGACACTTCTATTCACTAGTCTTCAATGCCTTGTTAGCTCATTTCAATCGTTCGCTATTGCCATTGCTTTGGAGAGAAACCTTGACGAATGGAAATTGGGTTGGAATCTTAGACTTCTTTCAGTCGCATATTGTGGAATAGTGGCAACTGGAGTTACATATTCTCTTCAAACATGGGTCATTAAGAAGAAAGGACCAGTTTTTTTAGCCATGTCAACGCCGATTATTCTTGTCATTACAACTATTTCTTCTGCTCTTCTTCTTGGCGAGAGTGTCAGCCTTGGAAGTGGTATAGGTGGGCTCTTACTAATTGGAGGTCTCTACAGTGTGCTATGGGGAAAGAACAAAGAGCAAAAAGTTAATGAAGAGCTAAAACAAGCTGACAAAGAATGCAGTTTGCCAGCGAGGGGAAGTGAGACATCTTAA | 1077 | 40.2 | MNLHNLRKMEKKPYFAVLLRHSIYAGMFLLSKAAFDGGMNNFIFVFYRQAIATLFLLPIALYFEWKTAPPLSFVTFAKIFMLSLFGITICLDLQGVALIYTSASLAAATINAIPVITFLFALLFRVEVLRLKSTVGLAKVGGIVFCMGGVLVLVFYKGPQLTFFNNHHLFSIHKHHQNPLHVASTQTWIKGCFLMMASNTLWALSLVLQAFVLKSYPSTLLFTSLQCLVSSFQSFAIAIALERNLDEWKLGWNLRLLSVAYCGIVATGVTYSLQTWVIKKKGPVFLAMSTPIILVITTISSALLLGESVSLGSGIGGLLLIGGLYSVLWGKNKEQKVNEELKQADKECSLPARGSETS | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 10336094 | 10345605 | - | CmoCh20G010880.1 | Cmo20g01088 | 405405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo20g01088 | 358 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 157 | - | - | |
| Cmo20g01088 | 358 | PANTHER | WAT1-RELATED PROTEIN | 12 | 342 | - | - | |
| Cmo20g01088 | 358 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 248 | 333 | - | - | |
| Cmo20g01088 | 358 | Pfam | EamA-like transporter family | 190 | 328 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo20g01088 | 358 | Pfam | EamA-like transporter family | 13 | 154 | IPR000620 | GO:0016020|GO:0016021 | |
| Cmo20g01088 | 358 | PANTHER | WAT1-RELATED PROTEIN | 12 | 342 | IPR030184 | GO:0016021|GO:0022857 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo03g01066 | Cmo20g01088 | CCT | |
| Cmo07g00804 | Cmo20g01088 | CCT | |
| Cmo02g00591 | Cmo20g01088 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g00591 | Cmo-Chr2:3540127 | Cmo20g01088 | Cmo-Chr20:10336094 | 5.66E-159 | dispersed | |
| Cmo04g02564 | Cmo-Chr4:18779783 | Cmo20g01088 | Cmo-Chr20:10336094 | 4.25E-102 | dispersed | |
| Cmo07g00804 | Cmo-Chr7:3703448 | Cmo20g01088 | Cmo-Chr20:10336094 | 6.22E-100 | dispersed | |
| Cmo07g00805 | Cmo-Chr7:3711177 | Cmo20g01088 | Cmo-Chr20:10336094 | 1.10E-117 | dispersed | |
| Cmo20g01088 | Cmo-Chr20:10336094 | Cmo09g00792 | Cmo-Chr9:4054770 | 2.40E-74 | dispersed | |
| Cmo20g01086 | Cmo-Chr20:10308282 | Cmo20g01088 | Cmo-Chr20:10336094 | 1.48E-125 | proximal | |
| Cmo20g01087 | Cmo-Chr20:10313842 | Cmo20g01088 | Cmo-Chr20:10336094 | 2.35E-79 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo20g01088 | - | - | csv:101203024 | 458.373 |