Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01089 ATGATGAGGCTCTTCTCCTCTGCAACGTTCTCGCTTTCCTCTCTCTGTTCTTCTTCTTCTTCCTCCTCCTCTCTTCCTTTTCCATCACGCGTTCTCCTTCTTGGCTTATCTCAATTTTCAACTTCTTCTTCGTCATTGAGGCGGCACGACGAAGAGTCTCGAAATGTGAGGGTTTCTGTCTGGTGGGACTTCGAGAATTGCAACATTCCCGCGGGTGTGAACGTGTTTAAGGTCGCCCATTTGATCACTGCCGCGGTAAGGGCCAATGGCATCAAAGGCCCTCTTCAGATTACTGCTTTCGGAGACATTTTACAGCTCTCCAGGGCCAACCAAGAGGCTCTCTCTTCTACTGGGATTAGCCTGACCCACATTCCTCAAGGTGGTAAGAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTACTGGGTTTCTCAAAATCCTCCACCAGCACATCTTTTTCTAATTTCTGGCGACAGGGACTTTGCCGGCATTTTGCACCGCTTAAGAATGAATAATTACAATGTGTTGCTAGCAAGCCCTGACACTGCTCCTGGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGAATACTTTGATTAGAGGGGAAAATCTAGTCGGAAGGCATTTTAATCGACCACCTGATGGTCCGTATGGTTCTTGGTATGGCCATTATAAGGTTCCTCTTGAAGACCCATATCCAGTTAATGAGCAACCGTCTTCTTTACGAGCCGAGGTTTCCGAGCTCAGTTCAGACCCTAAGCCTCGTCCCATTCCAAAGACAGTCATTAGGCAATTACACAACATTTTGAAGTTGCATCCCAAGGGAATCCTTATTACAGAACTTCGCTCAGAGTTGGGAAAGAGTATGGATAAGGACTTTTATGGTTACAAAAAGTTTTATCGCTTTCTTTTGTCAGTGCCACACATTTTAAAGCTTCAAACAAATGGTGATGGCCAATGTATTGTCTGTCCAGTCACTCCAAGTCCCATAGAACCATTAGAGTGCAGTAGAGGTACATCTAGTGATGGCAATGGAGGGCAGGATCCTAATATGAGAGCAAATTTAAATAATAATGATTCCTCAACGGAATCGATCAGTGAATCAGTCCTTCCATCCAGTGAACGAAGCGCCGAAGACAGACAATTGAAGGTGAAACCATCTTCTGAATTTGGTATGTCTATTGGTGAAGGTATGGAAGGGGAATCATCAAGATTCCCGGTTTCTGAGCCACATGTTATAGAAGATTCAAAGCAAACCAGTCAATTTGAAGCTGAGAGTAGTAAGAATCCTTCAATTGGACAGCTTTCGGAGTCCGAGATGGGATTTTTTAGAAGAATATGGAGAAGGCTTTTAAGCAATAATAACCATATTTGTGAAAATGGAAGCCATAATATTTCTGAAAAATGCTCTACATCAGATGATACTTCCAAGCATAAAAGTTGTAGTGGCCTCCTTGGGAAGGCAAAAACTGTGAAGCCAATGAGTCAAGATGCTAATTGTGTGCATCCAGTTTCAAATTCACCTGATCATGAGTCTGCTAAGCTTCAGAAAACAGCCGTAGTTGCTAGTGAATATGATGTTAAATTTAGTTCTAATCCAGGATTACTTGGTAGTATTAGAAATTGGTTCAAGTTTTGGGGAAAGAATACTGAGAACGGCGAAGTCAGCGAGCGTTCTTGTGAACGTAACCAGTTAAAGAATCAATCTGAGAATCACCATCTTTTTTCCAGCAATTCTTTTTGGCAAGATATCCAATCCTTTATGGAAACACCTAAAGGAGTTCAGATTATTTTGCGGTCGAAAACCAGGTCGGAGATAGCTGAAAATCTGCTAGAGGGAGGGCCTCCGGTTCTTAAATCTTTAAGCATTAGTGATCTGTTCGACTTTTTGGAATTGTTAATATCAGATAAGAAATGGGTTGTGGAATGCCCGTCTGAAGCAAATCCTTTTAAGCTCACTCTCTCTGTTGCTAGGAAAAGCTCTTGCACTAAACAGTTGCATCATGCAAATGGGTTGGCATCAATCTTTATGAACAAAGTGTCACAGTGCAGCTTGCAGGGATCTGCAGAACATGATTCAGATTCTGAAAAGAAAAATGAAAATATTCCTCAAGCTGGACATTATACAACTATGACTAGAAGAAAGTTTCCAGAGAGGACGAGAAGCGAGATATTAGGCGACTGTCGAAAGCTCGTGGATGAGATCTTGAGGGATCACCCCGAAGGATATAAGATGGGGGCTTTCAGAAAACTGTTTCTTGAGAAGTATGGGTATCATCTTAACTTGCAGAAGCTTGGTTACCATAAGTTGGCGTCCTTGCTACAGATAATGCCTGGAGTGGCAGTAGCATCCACATTGATAGTTCCCACCAGTAAGGCCCCAAAAGTTTCAAAGTTGGAAACCGCTCTTCTCAGCGATCCTGGGAAAAAGACGTCCCATGTCGTAGTAACCTCGGGTAATGACTCATCTGTCCTGCCTAGAAAGGATGACGATTTTGAGTCCTCCTGGGGAGAATTGGGTCCAGCCTGCACAGATTGGAGCAACATAAATGAAGCAGAATCAACATTGATTCGTGACACAGCTGAGGCGACAGAGAAAAGACCAATGGTTGATTATGAACCTGTCCTTTCAGAGGATGAATTAACAGAATCTGATGGAGAATCTTGTCCTGCTACACACAGATCAGAAGAGCAAGCCAAGCAACGAACAGACGAGGAAGAAAGCTCATTAATACAGATCCTCGATTCATGGTATAGCAGCGAAGAAGACAGTAGGAAAGACAAGTTGGAAAATAGCGATGAGAGGATCGATTGTTCTGAAAATAGTTCGAAGCTTTCTAGTTTAGCTGCCAAAAGTGAAGCAAATACAGAGAGCTTTGCTAGAAAGCAAAGACATCAAAAGAGCTATTCTTTTGTTTCAGACACGGATGAAAAGGACGATGTAGAGCTGATTGATGGGATTTTTGGCACGTTGAAGAAATCGAGCAAGTCACGGATACATAATTGA 3015 42.72 MMRLFSSATFSLSSLCSSSSSSSSLPFPSRVLLLGLSQFSTSSSSLRRHDEESRNVRVSVWWDFENCNIPAGVNVFKVAHLITAAVRANGIKGPLQITAFGDILQLSRANQEALSSTGISLTHIPQGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMNNYNVLLASPDTAPGVLCSAASIMWHWNTLIRGENLVGRHFNRPPDGPYGSWYGHYKVPLEDPYPVNEQPSSLRAEVSELSSDPKPRPIPKTVIRQLHNILKLHPKGILITELRSELGKSMDKDFYGYKKFYRFLLSVPHILKLQTNGDGQCIVCPVTPSPIEPLECSRGTSSDGNGGQDPNMRANLNNNDSSTESISESVLPSSERSAEDRQLKVKPSSEFGMSIGEGMEGESSRFPVSEPHVIEDSKQTSQFEAESSKNPSIGQLSESEMGFFRRIWRRLLSNNNHICENGSHNISEKCSTSDDTSKHKSCSGLLGKAKTVKPMSQDANCVHPVSNSPDHESAKLQKTAVVASEYDVKFSSNPGLLGSIRNWFKFWGKNTENGEVSERSCERNQLKNQSENHHLFSSNSFWQDIQSFMETPKGVQIILRSKTRSEIAENLLEGGPPVLKSLSISDLFDFLELLISDKKWVVECPSEANPFKLTLSVARKSSCTKQLHHANGLASIFMNKVSQCSLQGSAEHDSDSEKKNENIPQAGHYTTMTRRKFPERTRSEILGDCRKLVDEILRDHPEGYKMGAFRKLFLEKYGYHLNLQKLGYHKLASLLQIMPGVAVASTLIVPTSKAPKVSKLETALLSDPGKKTSHVVVTSGNDSSVLPRKDDDFESSWGELGPACTDWSNINEAESTLIRDTAEATEKRPMVDYEPVLSEDELTESDGESCPATHRSEEQAKQRTDEEESSLIQILDSWYSSEEDSRKDKLENSDERIDCSENSSKLSSLAAKSEANTESFARKQRHQKSYSFVSDTDEKDDVELIDGIFGTLKKSSKSRIHN 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10375329 10380313 + CmoCh20G010890.1 Cmo20g01089 405406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 960 978 - -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 925 978 - -
Cmo20g01089 1004 Pfam NYN domain 57 192 IPR021139 GO:0004540
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 337 375 - -
Cmo20g01089 1004 Pfam OST-HTH/LOTUS domain 732 784 IPR025605 -
Cmo20g01089 1004 Pfam OST-HTH/LOTUS domain 263 325 IPR025605 -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 813 832 - -
Cmo20g01089 1004 Gene3D - 49 199 - -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 925 943 - -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 944 959 - -
Cmo20g01089 1004 PANTHER LIMKAIN B LKAP 15 944 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 889 911 - -
Cmo20g01089 1004 Gene3D - 261 328 IPR041966 -
Cmo20g01089 1004 ProSiteProfiles OST-type HTH domain profile. 260 329 IPR025605 -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 416 437 - -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 690 709 - -
Cmo20g01089 1004 CDD LOTUS 728 783 - -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 861 911 - -
Cmo20g01089 1004 Gene3D - 722 788 IPR041966 -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 337 437 - -
Cmo20g01089 1004 PANTHER EMB|CAB71880.1 15 944 - -
Cmo20g01089 1004 CDD LOTUS 261 326 - -
Cmo20g01089 1004 MobiDBLite consensus disorder prediction 861 877 - -
Cmo20g01089 1004 CDD PIN_limkain_b1_N_like 57 181 - -
Cmo20g01089 1004 ProSiteProfiles OST-type HTH domain profile. 727 803 IPR025605 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01089 - - - cpep:111796232 1371.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00893 Cmo-Chr15:4509498 Cmo20g01089 Cmo-Chr20:10375329 8.49E-40 dispersed
Cmo02g00593 Cmo-Chr2:3594612 Cmo20g01089 Cmo-Chr20:10375329 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo20g01089 Cmo_Chr20 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0