Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01090 ATGGCGAAATCACCGGAAGATGAACATCCACACAAGGCTTTTGGTTGGGCTGCTCGAGATCCTTCCGGCTTACTCTCCCCTTTCCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTCTCTATCAAAATCCTTTACTGTGGGGTTTGCCACTCTGATTTGCATATGCTCAAGAATGACTGGGGGGCAACAGATTATCCTATAGTCCCTGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGTAAAAATGTGAAGAAATTCAAAGCAGGCGATGAAGTTGGGGTTGGTGTCATTGTTGGATCTTGTAGAAACTGTGAAAATTGTAAACAAGACTTGGAGAGTTACTGTCCCAAGATGGAATATACATACAATTCTCCTGCAATCGATGGATCGAAGAATTACGGTGGCTATTCCGACAAGATCGTTGTCGATCAACATTTTGTTGTTCGATTTCCTAAGAACTTAGCTCTTGATGCTGGGGCTCCTCTCCTATGTGCTGGAATTACTGTTTATAGTCCAATGAAATACTTTGGAATGACTGAACCTGGTAAGCATTTGGGTGTGGCTGGACTTGGCGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTTATTAGTACCTCTCCTAGGAAGAAGGAGGAAGCAATCGACAGGCTCGGGGCCGATGCTTTCGTTGTATCGAGTGATCCCGATCAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCATGCTCTTGATCCATTGATTAGTCTGCTAAACCTCAACGGAAAGTTGGTCGCGGTCGGGTTACCTAACAAACCAGTTGAACTATCGCTCGGGTTTCTAGTCTCTGGAAGGAGATTGATTGCTGGAAGCAACTTTGGTGGACTGAAAGAGACACAAGAGATGTTGGATTTCTGTGGCAAACACAACATTACAGCTGATATTGAGCTCATTAAGATGGATGCCATTAACTCGGCTATCGAAAGGCTCGGGAAAGCTGATGTTAAATATCGGTTCGTGATCGACATCGAAAACTCGTTCAAATCGACGGTACAATAA 1089 43.99 MAKSPEDEHPHKAFGWAARDPSGLLSPFHFSRRENGDDDVSIKILYCGVCHSDLHMLKNDWGATDYPIVPGHEIVGVVTSVGKNVKKFKAGDEVGVGVIVGSCRNCENCKQDLESYCPKMEYTYNSPAIDGSKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMKYFGMTEPGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPDQLKAAMGTMDYILDTISAVHALDPLISLLNLNGKLVAVGLPNKPVELSLGFLVSGRRLIAGSNFGGLKETQEMLDFCGKHNITADIELIKMDAINSAIERLGKADVKYRFVIDIENSFKSTVQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10384192 10388488 + CmoCh20G010900.1 Cmo20g01090 405407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01090 362 PANTHER ALDEHYDE REDUCTASE 11 358 - -
Cmo20g01090 362 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 11 358 - -
Cmo20g01090 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Cmo20g01090 362 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Cmo20g01090 362 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Cmo20g01090 362 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Cmo20g01090 362 Gene3D - 167 323 - -
Cmo20g01090 362 CDD CAD1 14 352 - -
Cmo20g01090 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 321 IPR036291 -
Cmo20g01090 362 Gene3D - 16 353 - -
Cmo20g01090 362 SUPERFAMILY GroES-like 19 185 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02044 Cmo-Chr1:14317207 Cmo20g01090 Cmo-Chr20:10384192 1.21E-142 dispersed
Cmo02g00593 Cmo-Chr2:3594612 Cmo20g01090 Cmo-Chr20:10384192 2.45E-171 dispersed
Cmo02g00969 Cmo-Chr2:5943970 Cmo20g01090 Cmo-Chr20:10384192 1.76E-119 dispersed
Cmo03g00890 Cmo-Chr3:6905091 Cmo20g01090 Cmo-Chr20:10384192 2.37E-170 dispersed
Cmo04g00501 Cmo-Chr4:2509137 Cmo20g01090 Cmo-Chr20:10384192 4.39E-116 dispersed
Cmo11g01393 Cmo-Chr11:9761168 Cmo20g01090 Cmo-Chr20:10384192 4.76E-123 dispersed
Cmo16g00363 Cmo-Chr16:1669071 Cmo20g01090 Cmo-Chr20:10384192 3.64E-122 dispersed
Cmo20g01090 Cmo-Chr20:10384192 Cmo16g00159 Cmo-Chr16:719850 4.16E-19 dispersed
Cmo20g01090 Cmo-Chr20:10384192 Cmo20g01091 Cmo-Chr20:10389642 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01090 K00083 - csv:101205228 660.218