Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01092 ATGAAATATTGCATTGATGCTCTCGCTCTCACAAGCTCGGTGATTTTCCTAGCAGCTTCTGCAGGCGTCTTTGCTGCTACACCACCTATTCCCATTGAAAAGTCGGAACTAGACGCTTGGTATTCCAAAAATGTGAAGCCCTTAACCGATCGCAAGGGGGAGCTTGATCCAGCCCTTGTGGCTGCTGAAGAACGCACCACTGTGGTTAAAGTAAGAGCCGATGGAAGTGGAGATTTCAAAACTGTGGCCGAAGCCATCGCTAGTGTTCCTCCTGGTAACACCAAACGCGTCGTGATTTGGATCGGAGGAGGAGTTTATAAAGAGAAGCTTACGATTGATAGGACTAGACCATTTATTACCCTTTATGGCTCCCCTAATAATATGCCTAACTTGACCTTTGATGGAGATGCTAAAACATATGGCACCGTTTACAGTGCATCTTTGAGCGTTGACTCTGATTATTTCGTCGCTGCCAATCTCGTCATTGAGAATTCATCTCCAAGACCAGATGGAAAAAGAAAAGGAGCTCAAGCATTAGCGGCTCGACTAAGAGGGAACAAAGCCGCAGTTTACAATTGCAAATTCATAGGGTTTCAAGACACCCTATGCGACGACGATGGCTTACATGTTTACAAGGATTGCTTCATTCAAGGCACCGTGGACTTCGTCTTCGGCAAGGGAACATCACTTTTCTTGAACACACAGCTCGACGTGGTGGTGACCGACGACGAATTGGGAGTGATAACAGCGCATTCAAGAGAAAAGAAAACCGACCCGAGTGGGTATGTGTTCGCGCATTGCAGCATTACAGGCACGGGCGGGAGGAACACCTTTTTGGGAAGATCTTGGAGGCCATGGTCTAGAGTTGTGTATGCCTACACCACCATGGCTGACATTATTAACCGTGAAGGGTGGAACGACATGAGAATCCCGGCTTTCCACAGTACGGTGTTCTTCGGAGAATATAAGTGTTCGGGGCCGGGATCGGAGACGAGCGGCAGAGTTGATTTCAGCAAGCAGTTGAGTAGTGATGAAGTGAGGCCGTTTATTAACCTTGGGTTCGTGCAGAGTGACAAGTGGCTGCTTCCTCCTCCCGAACTCTAG 1104 48.1 MKYCIDALALTSSVIFLAASAGVFAATPPIPIEKSELDAWYSKNVKPLTDRKGELDPALVAAEERTTVVKVRADGSGDFKTVAEAIASVPPGNTKRVVIWIGGGVYKEKLTIDRTRPFITLYGSPNNMPNLTFDGDAKTYGTVYSASLSVDSDYFVAANLVIENSSPRPDGKRKGAQALAARLRGNKAAVYNCKFIGFQDTLCDDDGLHVYKDCFIQGTVDFVFGKGTSLFLNTQLDVVVTDDELGVITAHSREKKTDPSGYVFAHCSITGTGGRNTFLGRSWRPWSRVVYAYTTMADIINREGWNDMRIPAFHSTVFFGEYKCSGPGSETSGRVDFSKQLSSDEVRPFINLGFVQSDKWLLPPPEL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10397241 10398985 - CmoCh20G010920.1 Cmo20g01092 405409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01092 367 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cmo20g01092 367 Gene3D - 63 363 IPR012334 -
Cmo20g01092 367 PANTHER PECTINESTERASE 63-RELATED 34 362 - -
Cmo20g01092 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 362 - -
Cmo20g01092 367 SUPERFAMILY Pectin lyase-like 67 361 IPR011050 -
Cmo20g01092 367 Pfam Pectinesterase 69 357 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00818 Cmo-Chr10:3825599 Cmo20g01092 Cmo-Chr20:10397241 6.42E-132 dispersed
Cmo17g00992 Cmo-Chr17:8568769 Cmo20g01092 Cmo-Chr20:10397241 4.15E-86 dispersed
Cmo20g00147 Cmo-Chr20:720335 Cmo20g01092 Cmo-Chr20:10397241 0 dispersed
Cmo20g00149 Cmo-Chr20:726122 Cmo20g01092 Cmo-Chr20:10397241 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01092 K01051 - csv:101205095 527.324