Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01128 ATGGACCTCTCTTCCCTCCCCTCCAAAGACACCACTTGGTGGCTCTTCACCCTCCCTCACTTCCTCCCCTCCCAACCCTCTCCTCTCCTCCTCCTCCTCGCTTTTCTCTCCCTCGCCTTCCTCTCCGCCCTTCTCGCCACAGCCGGCACTGCCTGGCCCAATGGAAGGAACCATAGAGGCCAACGTCCCATCCCCGGCGCCCGCGGCCTTCCAATTCTCGGCAGCTTGTTCTCTCTCACCCACGGCCTTCCCCACCGGACTCTGGCTGCCATGGCTGCAGCCACAGGCAGCTCTCAGCTAATGGCCTTCAGTCTAGGCTCCACCCCTGTTGTGGTTACCTCCGACCCTCATACAGCCAAGGAGATTCTAACCTCACCCCACTTCGCTAACCGCCCCCTCAAGCAGTCCGCCAAGAGTCTAATGTTCGGCCGAGCCATAGGGTTCGCCCCAAACGGCACCTACTGGCGTCTACTGAGGCGAATCGCATCGACCCACTTATTCTCTCCCAAACGTATCGCCGCCCACGAACCCGCTCGCCAGCTCGAATGCGCCGCCATGTTACAAACCATTCACAACCAACAAACCCTTCACGGAGCCGTTTCCTTACGAAAACACCTCCAAGCCGCTGCCTTGAACAACGTGATGTGGAGCGTATTTGGAAAGCGGTTCGACCCGACCGATCCCAAATTAGAAACGGTTCGCGAGTTGGTTCGTGAAGGGTTCGAGCTGCTCGGTGCGTTTAATTGGTCGGATTATCTCCCCTGGCTTAGTGGATTCTACGACCCGGGTCGTATCCGCCACCGCTGCGCCCGACTCGTCCCTAAAGTTAATGAATTTGTCCGCGGCGTAATTGATGAGCACCGCCGCGGTGAAGCTCCGTCGGATGATTCCGATTTCGTCGACGTTTTGCTGTCTCTCGACGGCGATGAAAAGCTCAACGAGGATGACATGGTGGCTGTCTTATGGGAAATGATTTTCCGGGGTACGGACACGACGGCGCTGCTGACGGAGTGGGTGGTGGCGGAGTTAATTTTACATCCGGAGATACAGGGAGAAGTCGCGAGGGAAATCGCCACCGCTATAGGCGGAAGGAGCCTCTCAGACGCTGACGTGGCGAATCTGCCGTACTTACAGGCGGTGGTGAAGGAGACACTGCGGCTACACCCACCAGGTCCACTACTCTCGTGGGCCCGCCTCTCTTCGTCGGATGTCCACCTCAGCAACGGCATGCTTATCCCAGAGAACACAACCGCCATGGTCAACATGTGGGCCATAACGCACGACCCCCACGTATGGGAAGATCCACACGTGTTCAACCCAGGGAGGTTCGTGGGTGCCGACGTGGACATCAGAGGCTGCGACCTCCGACTAGCGCCGTTCGGAGCAGGGCGGAGGGTGTGTCCAGGGAAGAATCTGGGGCTGGTGACGGTCACACTGTGGGTGGGTAAGCTGGTCCATCACTTTAAATGGGGTCCGGACCCAGCCGCCCCCGTGGACCTGAGTGAGGTGCTGAAGCTCTCGTGTGAGATGAAGCATCCGCTAAGTGCGGTGGCAGTGACAAGAAATGGATTTTAG 1575 58.41 MDLSSLPSKDTTWWLFTLPHFLPSQPSPLLLLLAFLSLAFLSALLATAGTAWPNGRNHRGQRPIPGARGLPILGSLFSLTHGLPHRTLAAMAAATGSSQLMAFSLGSTPVVVTSDPHTAKEILTSPHFANRPLKQSAKSLMFGRAIGFAPNGTYWRLLRRIASTHLFSPKRIAAHEPARQLECAAMLQTIHNQQTLHGAVSLRKHLQAAALNNVMWSVFGKRFDPTDPKLETVRELVREGFELLGAFNWSDYLPWLSGFYDPGRIRHRCARLVPKVNEFVRGVIDEHRRGEAPSDDSDFVDVLLSLDGDEKLNEDDMVAVLWEMIFRGTDTTALLTEWVVAELILHPEIQGEVAREIATAIGGRSLSDADVANLPYLQAVVKETLRLHPPGPLLSWARLSSSDVHLSNGMLIPENTTAMVNMWAITHDPHVWEDPHVFNPGRFVGADVDIRGCDLRLAPFGAGRRVCPGKNLGLVTVTLWVGKLVHHFKWGPDPAAPVDLSEVLKLSCEMKHPLSAVAVTRNGF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 10922050 10924170 - CmoCh20G011280.1 Cmo20g01128 405445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01128 524 PANTHER CYTOCHROME P450 78A7-RELATED 7 523 - -
Cmo20g01128 524 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS P450 superfamily signature 467 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Cmo20g01128 524 Gene3D Cytochrome P450 54 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 SUPERFAMILY Cytochrome P450 64 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 Pfam Cytochrome P450 65 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 94 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 209 227 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo20g01128 524 PANTHER CYTOCHROME P450 FAMILY 78 PROTEIN 7 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00685 Cmo-Chr18:8754063 Cmo20g01128 Cmo-Chr20:10922050 2.77E-162 dispersed
Cmo20g01128 Cmo-Chr20:10922050 Cmo12g00085 Cmo-Chr12:453319 7.61E-155 dispersed
Cmo20g01128 Cmo-Chr20:10922050 Cmo17g00473 Cmo-Chr17:3418249 2.64E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01128 K20619 - csv:101214099 768.844