Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01135 ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCAGCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCTCCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATAAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTACTCTCTTTTCTTTTGCTTTTTTGTTCCATTCTCTTTCTCTCTCTAG 708 39.83 MGSKSQLLLNPQQALFEDQDHQTPAISQMGFFNFPSNPFENPNFSTSNNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTIKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFWYSLFFCFFVPFSFSL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 11017198 11018323 - CmoCh20G011350.1 Cmo20g01135 405452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01135 235 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 214 IPR044810 GO:0003700
Cmo20g01135 235 SUPERFAMILY WRKY DNA-binding domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo20g01135 235 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 41 214 - -
Cmo20g01135 235 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g01135 235 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo20g01135 235 Gene3D WRKY domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo20g01135 235 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01049 Cmo20g01135 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02238 Cmo-Chr14:15875010 Cmo20g01135 Cmo-Chr20:11017198 1.88E-47 dispersed
Cmo20g01135 Cmo-Chr20:11017198 Cmo12g00074 Cmo-Chr12:398380 4.38E-36 dispersed
Cmo02g00599 Cmo-Chr2:3670966 Cmo20g01135 Cmo-Chr20:11017198 3.86E-90 wgd
Cmo20g01135 Cmo-Chr20:11017198 Cmo03g01049 Cmo-Chr3:7826027 7.62E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11787 PF03106 WRKY 3.90E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01135 - - cmos:111434882 402.519