Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g01135 | ATGGGTTCCAAATCCCAACTCCTATTGAACCCACAACAAGCTTTGTTTGAAGATCAAGATCATCAAACACCAGCAATTTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACCCCTTTGAGAATCCAAATTTCTCAACCTCCAACAATAATAATAATAATTCCGACACCAACCTTAATCTCTCCGAAACCCTACTTTTTTCTTCTATGAATTTGCCCCTCAAGCCCTCCCCTTTCTATGAATTTGCTCCTCCACACCTCCTTTCCTTGCAAACTTCCACTCCAAATCTATGGCCATGGGGAGAGATTGGGAAGAGAAGCAATGAAAATCAATTGGGAATTTCAACAATAAAGATGAAGAAGATCAAAGGAAGAAGAAGAGTTCGAGAGCCAAGATTTTCATTCAAAACCCTAAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGGAAGTATGGCCAGAAAGTTGTCAAGAACACACAGCATCCTCGAAGCTATTACCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTGGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAACCCATCTCAATAATTTCTTCTGGTACTCTCTTTTCTTTTGCTTTTTTGTTCCATTCTCTTTCTCTCTCTAG | 708 | 39.83 | MGSKSQLLLNPQQALFEDQDHQTPAISQMGFFNFPSNPFENPNFSTSNNNNNNSDTNLNLSETLLFSSMNLPLKPSPFYEFAPPHLLSLQTSTPNLWPWGEIGKRSNENQLGISTIKMKKIKGRRRVREPRFSFKTLSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFWYSLFFCFFVPFSFSL | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 11017198 | 11018323 | - | CmoCh20G011350.1 | Cmo20g01135 | 405452 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g01135 | 235 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 41 | 214 | IPR044810 | GO:0003700 | |
Cmo20g01135 | 235 | SUPERFAMILY | WRKY DNA-binding domain | 136 | 202 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo20g01135 | 235 | PANTHER | WRKY TRANSCRIPTION FACTOR 13-RELATED | 41 | 214 | - | - | |
Cmo20g01135 | 235 | ProSiteProfiles | WRKY domain profile. | 138 | 203 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo20g01135 | 235 | SMART | WRKY_cls | 143 | 202 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo20g01135 | 235 | Gene3D | WRKY domain | 130 | 196 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo20g01135 | 235 | Pfam | WRKY DNA -binding domain | 144 | 200 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01049 | Cmo20g01135 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g02238 | Cmo-Chr14:15875010 | Cmo20g01135 | Cmo-Chr20:11017198 | 1.88E-47 | dispersed | |
Cmo20g01135 | Cmo-Chr20:11017198 | Cmo12g00074 | Cmo-Chr12:398380 | 4.38E-36 | dispersed | |
Cmo02g00599 | Cmo-Chr2:3670966 | Cmo20g01135 | Cmo-Chr20:11017198 | 3.86E-90 | wgd | |
Cmo20g01135 | Cmo-Chr20:11017198 | Cmo03g01049 | Cmo-Chr3:7826027 | 7.62E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11787 | PF03106 | WRKY | 3.90E-24 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g01135 | - | - | cmos:111434882 | 402.519 |