Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01147 ATGGCCTCCTCTTCAAATCCCATCTCTCTCCTCCTATTCTTCTCTCTCCTCTTCCTCTTCACCTCGTCCTCCGCCGTTCCGACGGTCGAGGTTTGCCAATCCGCAACCTCCCCGTCCTTCTGCAAATCCTTCCTCCCCTCCTCCCCGGCCTCCGTCCACTCCCATTGTCGCTACACTCTCCATCACGCCTTGGTCCAAGCGCGCACCTTTGTAACCCTAGTTGATCTCCAACTTACCCTATTTCCTTCCCTCTCGGCCCTCCATGATTGCCGCTCCCTCGCCGTGGCCAACCTCGACTTCATATCGAGCACAGTCGACACCGTCAACACCACCACCAATGCCCTTCCGTTTTACCAAGCCGATGAGATGATATCCTTGCTTAGCGCAGTGATCACCAACATAGATACTTGCCATGATGGCTTAGCAGGCTCGGGCTTGGGCTTGGGCTTTGTTGATAAGGTGGTGAAAGCTATCTCCTTTGATAGACAGCTTTATAGTTTGTACCTTTCTTTGTTCAAAATGGGTTGGGTTTCTAAGAACATGAAGGCTCCTAAGTTGCCAAAAACTAACCATTTTGGGTTCGGGAAAGGTCCGTTGAAGCTCAAAATGTCGCCCAAAGACCGCGCCTATTATGAGCGGTTGGTGCATGGGAAGAAGCCGGCGGCTCGAAGGCTTCTTCAGACCAATTATGCTGATGATGGCATTTTGGTCAATGGTGTTGTTGCTGTGGACCAAAATGGAGCATATGACTTCACCACCATCAATGACGCCATTGCGGCAGCTCCGAACAAATCCACCGCCGCGAACGGGTACTTTTTGATATTCGTCACCGCCGGGATTTACATGGAGAGCGTAGTGGTTCCGAAAAGTAAAAAGTACGTGTTGATGATCGGAGAAGGTAACAACAGAACTATCATCACCGGGAACAAGAATGTCGTTGATGGTTCTACCACTTTCAATAGCGCGACCGTCATCGTGGAGGGAACAGGGTTCTTCGGGGCAAACCTAACCATCACCAACACCGCCGGCGCCATCAAACACCAAGCTGTGGCATTGCGAGTGAGCGCCGACATGACGACGTTCTACAGCTGCATATTCGAAGGATACCAAGACACTCTATACGCTCACTCCCTCCGCCAATTCTACCGAGAATGCGACATCTACGGCACGGTCGACTTCATCTTCGGCAACGCCGCTGTCGTCTTACAAAACTGCAACATCTACGCTCGCCTCCCTCTGAGCGGGCAATTCAACGCCCTCACAGCACAGGGCCGGACCGACCAGAATCAGAACACCGGAATCTTCATTCACAAATGCACCATCAAACCAACTCCCGACCTCGCCGCTAGCCCCACCACCAAGAGCTACTTAGGGCGGCCGTGGAAGGAATTTTCTCGAACAGTTTACATGCAGTCGTTTATCGATGCCTTCATCGACCCTGCAGGGTGGAAAGAGTGGGACGGGACTTTGAATTTGAACACTTCGTATTACGCCGAGTTTGATAACTCCGGGCCGGGTTCCGACACTTCGCAACGGGCACAGTGGGCTGTCGGGGTAATCAACGCCACCGTTGCTAATATCTTCACGGTGTCTGAAATCTTGGCCGGAGATCAATGGCTGCCGCCCACCGCCGTGCCATACAGCGGCGGTTTGATATCATAA 1662 52.47 MASSSNPISLLLFFSLLFLFTSSSAVPTVEVCQSATSPSFCKSFLPSSPASVHSHCRYTLHHALVQARTFVTLVDLQLTLFPSLSALHDCRSLAVANLDFISSTVDTVNTTTNALPFYQADEMISLLSAVITNIDTCHDGLAGSGLGLGFVDKVVKAISFDRQLYSLYLSLFKMGWVSKNMKAPKLPKTNHFGFGKGPLKLKMSPKDRAYYERLVHGKKPAARRLLQTNYADDGILVNGVVAVDQNGAYDFTTINDAIAAAPNKSTAANGYFLIFVTAGIYMESVVVPKSKKYVLMIGEGNNRTIITGNKNVVDGSTTFNSATVIVEGTGFFGANLTITNTAGAIKHQAVALRVSADMTTFYSCIFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPLSGQFNALTAQGRTDQNQNTGIFIHKCTIKPTPDLAASPTTKSYLGRPWKEFSRTVYMQSFIDAFIDPAGWKEWDGTLNLNTSYYAEFDNSGPGSDTSQRAQWAVGVINATVANIFTVSEILAGDQWLPPTAVPYSGGLIS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 11262277 11264880 + CmoCh20G011470.1 Cmo20g01147 405464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01147 553 Gene3D - 237 551 IPR012334 -
Cmo20g01147 553 SUPERFAMILY Pectin lyase-like 237 550 IPR011050 -
Cmo20g01147 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 15 550 - -
Cmo20g01147 553 CDD PMEI-like_3 31 176 - -
Cmo20g01147 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 174 IPR035513 -
Cmo20g01147 553 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Cmo20g01147 553 Pfam Plant invertase/pectin methylesterase inhibitor 30 152 IPR006501 GO:0004857
Cmo20g01147 553 Pfam Pectinesterase 241 537 IPR000070 GO:0030599|GO:0042545
Cmo20g01147 553 PANTHER PECTINESTERASE 15 550 - -
Cmo20g01147 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 174 IPR035513 -
Cmo20g01147 553 SMART PMEI_2 21 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00431 Cmo-Chr8:2675526 Cmo20g01147 Cmo-Chr20:11262277 0 dispersed
Cmo17g01038 Cmo-Chr17:8815401 Cmo20g01147 Cmo-Chr20:11262277 0 dispersed
Cmo18g00972 Cmo-Chr18:10744845 Cmo20g01147 Cmo-Chr20:11262277 2.29E-147 dispersed
Cmo20g01147 Cmo-Chr20:11262277 Cmo02g00998 Cmo-Chr2:6110312 5.33E-117 dispersed
Cmo02g00608 Cmo-Chr2:3762699 Cmo20g01147 Cmo-Chr20:11262277 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01147 K01051 - csv:101216984 873.233