Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g01156 | ATGTCATCGTCGAATTCACCATGTGCGGCGTGTAAATTTCTTCGGCGAAAATGCACACAAGAATGCGTGTTCGCGCCGTACTTCCCACCGGATCAGCCGCAGAAATTCGCTAATGTTCACAAGGTGTTTGGCGCAAGCAACGTGGCGAAACTTTTGAATGAGTTGAACGCGTCGCAGCGTGAGGACGCAGTGAACTCATTAGCCTATGAGGCAGAGTTTCGTCTGCGAGACCCAGTGTACGGATGTGTCGGCCTTATCTCTGTCCTACAACACAAGCTAAAGCAAATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCACTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCTTACAATATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCCCAACAGATGCTCATTCGTGAGTCGCCCCATCAACAACAACAACATCAACACCAGATACAGCAGCAGCAGCAGCAGTTGTTTGAGGCTCAGCAATTGGCTGCGGCAGTAGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATTCTCCTTCCCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTGCCGGTGCCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCCGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAGCAGCAGCAGCCCCATCCACACCGATCGCAGCAAATCCACAAGCCTGAAGCTACTGCAGATGATGGTAGGAATATTAACATTGGACCCTCTTGTTGA | 1056 | 51.23 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIPSSGGGGSSQQMLIRESPHQQQQHQHQIQQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQQQQQQQQQQQQHSPSQRQHELLRFNGFDPAGVGAGAGAGAGGFNNQMNSPSDLTLGTFPDNSYQIQTQPEHSHSHSHSHHHHPLQVQLFPQPQQTQLDQSQQQQQQPHPHRSQQIHKPEATADDGRNINIGPSC | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 11332397 | 11333452 | - | CmoCh20G011560.1 | Cmo20g01156 | 405473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g01156 | 351 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 314 | - | - | |
Cmo20g01156 | 351 | MobiDBLite | consensus disorder prediction | 210 | 351 | - | - | |
Cmo20g01156 | 351 | MobiDBLite | consensus disorder prediction | 304 | 328 | - | - | |
Cmo20g01156 | 351 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cmo20g01156 | 351 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 314 | - | - | |
Cmo20g01156 | 351 | Coils | Coil | 86 | 106 | - | - | |
Cmo20g01156 | 351 | MobiDBLite | consensus disorder prediction | 259 | 288 | - | - | |
Cmo20g01156 | 351 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Cmo20g01156 | 351 | MobiDBLite | consensus disorder prediction | 156 | 185 | - | - | |
Cmo20g01156 | 351 | Coils | Coil | 175 | 195 | - | - | |
Cmo20g01156 | 351 | MobiDBLite | consensus disorder prediction | 153 | 185 | - | - | |
Cmo20g01156 | 351 | MobiDBLite | consensus disorder prediction | 210 | 237 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00781 | Cmo-Chr5:4480338 | Cmo20g01156 | Cmo-Chr20:11332397 | 2.40E-59 | dispersed | |
Cmo10g00109 | Cmo-Chr10:468151 | Cmo20g01156 | Cmo-Chr20:11332397 | 4.84E-51 | dispersed | |
Cmo11g00077 | Cmo-Chr11:363795 | Cmo20g01156 | Cmo-Chr20:11332397 | 1.21E-49 | dispersed | |
Cmo13g00898 | Cmo-Chr13:8029265 | Cmo20g01156 | Cmo-Chr20:11332397 | 4.81E-47 | dispersed | |
Cmo15g00170 | Cmo-Chr15:784533 | Cmo20g01156 | Cmo-Chr20:11332397 | 1.90E-46 | dispersed | |
Cmo20g01156 | Cmo-Chr20:11332397 | Cmo11g01668 | Cmo-Chr11:11836728 | 1.53E-48 | dispersed | |
Cmo02g00614 | Cmo-Chr2:3809187 | Cmo20g01156 | Cmo-Chr20:11332397 | 8.80E-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11788 | PF03195 | LOB | 1.90E-41 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g01156 | - | - | cmos:111434896 | 508.834 |