Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01156 ATGTCATCGTCGAATTCACCATGTGCGGCGTGTAAATTTCTTCGGCGAAAATGCACACAAGAATGCGTGTTCGCGCCGTACTTCCCACCGGATCAGCCGCAGAAATTCGCTAATGTTCACAAGGTGTTTGGCGCAAGCAACGTGGCGAAACTTTTGAATGAGTTGAACGCGTCGCAGCGTGAGGACGCAGTGAACTCATTAGCCTATGAGGCAGAGTTTCGTCTGCGAGACCCAGTGTACGGATGTGTCGGCCTTATCTCTGTCCTACAACACAAGCTAAAGCAAATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCACTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCTTACAATATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCCCAACAGATGCTCATTCGTGAGTCGCCCCATCAACAACAACAACATCAACACCAGATACAGCAGCAGCAGCAGCAGTTGTTTGAGGCTCAGCAATTGGCTGCGGCAGTAGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATTCTCCTTCCCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTGCCGGTGCCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCCGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAGCAGCAGCAGCCCCATCCACACCGATCGCAGCAAATCCACAAGCCTGAAGCTACTGCAGATGATGGTAGGAATATTAACATTGGACCCTCTTGTTGA 1056 51.23 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIPSSGGGGSSQQMLIRESPHQQQQHQHQIQQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQQQQQQQQQQQQHSPSQRQHELLRFNGFDPAGVGAGAGAGAGGFNNQMNSPSDLTLGTFPDNSYQIQTQPEHSHSHSHSHHHHPLQVQLFPQPQQTQLDQSQQQQQQPHPHRSQQIHKPEATADDGRNINIGPSC 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 11332397 11333452 - CmoCh20G011560.1 Cmo20g01156 405473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01156 351 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 314 - -
Cmo20g01156 351 MobiDBLite consensus disorder prediction 210 351 - -
Cmo20g01156 351 MobiDBLite consensus disorder prediction 304 328 - -
Cmo20g01156 351 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cmo20g01156 351 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 314 - -
Cmo20g01156 351 Coils Coil 86 106 - -
Cmo20g01156 351 MobiDBLite consensus disorder prediction 259 288 - -
Cmo20g01156 351 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cmo20g01156 351 MobiDBLite consensus disorder prediction 156 185 - -
Cmo20g01156 351 Coils Coil 175 195 - -
Cmo20g01156 351 MobiDBLite consensus disorder prediction 153 185 - -
Cmo20g01156 351 MobiDBLite consensus disorder prediction 210 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00781 Cmo-Chr5:4480338 Cmo20g01156 Cmo-Chr20:11332397 2.40E-59 dispersed
Cmo10g00109 Cmo-Chr10:468151 Cmo20g01156 Cmo-Chr20:11332397 4.84E-51 dispersed
Cmo11g00077 Cmo-Chr11:363795 Cmo20g01156 Cmo-Chr20:11332397 1.21E-49 dispersed
Cmo13g00898 Cmo-Chr13:8029265 Cmo20g01156 Cmo-Chr20:11332397 4.81E-47 dispersed
Cmo15g00170 Cmo-Chr15:784533 Cmo20g01156 Cmo-Chr20:11332397 1.90E-46 dispersed
Cmo20g01156 Cmo-Chr20:11332397 Cmo11g01668 Cmo-Chr11:11836728 1.53E-48 dispersed
Cmo02g00614 Cmo-Chr2:3809187 Cmo20g01156 Cmo-Chr20:11332397 8.80E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11788 PF03195 LOB 1.90E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01156 - - cmos:111434896 508.834