Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g01176 | ATGTCACAACAAGACTACCAGCAAGCGGCGGCGGCGGCGGCAGGCTTCTTCACGCCCTTCTCCAATGGCTTTGATAGATCCTCCACTGCCCACCAAGACCCTCAGCAACACTACCAACACATAGCCCACCAGATCCGCAAGGAGAAGCTTAGACTTCAAGGCTTCCACCCGCCGCCCCATCCGCCATCGTTAGTCGGAATTGACGATGACGATGATGACCAATCCGCTGGTGCTGCGGCGCTCCACCACGTCTACGATTCGGCTGGAATTTTATCGGAAATGTTCAATTTTCCTCCGGCTCCACCGCCACCGCCACCGCCGCCGCCACAGACGGAGTTGTATGGGAATCGGGAAGCGATGAACGCAGCTGACTCAGCGGTTGCCATGCAGCTTTTTCTGATGAACCCTAACCCTCGCTCGCCGTCTCCACCGCCGCCGCCACCGGCAGTCTCGTCCACGCTTCACATGCTTCTTCCAAACCCAGGTTCAGGAGGGTCTTTCGGACAATTCACGTGGGGTGTGGTTCCGGAGCAAGAAACAGGAGACCATTCTTCCTCAAACCCTAATGAAGGCCGTCTTTCGCTGTCGTTGTCATCGTCTTTGGAGGCTGCAAAAGCTGAGGAATTGAGAATGGGTGACAGCGCCAGTGGGTTACTTTATCAAACCCACCATCACCCCCAACATGTTCATGTCGGAATTGAGTCGTCTAATCCACTGGGGGTTGTCAACTTGTTGAGAAACTCAAAGTATGTTAAAGCTGCACAGGAATTATTGGAGGAGTTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAGGAGCAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGACGGCGCCGGAGTCTCTTCCTCCGCCGCAAAAGATCATCAGCCGCAGCCAGCTTTGTCAGCAGCTGATAGAATCGAACACCAAAGGAGGAAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGAGGAGGTGATGGGGTTGGGGGCGGCGGTTGCATACACGGCGTTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAGGACGCAATAGTAGGGCAGCTGAAGCAAAGCTGCGAGATGTTAGGGGACAAAGATGGGGGAAGAGCCTCTGGAATAACAAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGCTGAGACAGCAACGAGCCTTCCACCAAATGGGCATCATGGATCAAGAAGCTTGGCGTCCTCAACGCGGCCTCCCCGAACGCTCTGTCAACATCTTGCGCGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCTAGTGATGCTGATAAGCATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAACCAGACTGCCCTTTGTCATCGGCATTCACCAGAACCCAGCGGCTGTTACTTCGCTGCCGCTGCCGCTGCCTGCCTGCCTGCCTGCCTTCCTGCATTCCTGCCTGCCCCTCTCCTTGCCCTCTTCTGCCATTATTATGTTCTAAAAGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAAGAAGAAGAAGAAGAAGATGATGATGATGATGAGGATAATACAGATGAGGACACAAAAACCAACCCCCATCAAATTACCTCTAATGCCCTTTCACAAACTCCAACGCCGCCGTCCGACGCCACTCCTCCACCACCACCACCACCACCACCACCACCACCAAGCCATCCTCCACCCTTCTCGCAAAACCAACAATATTCCTCCCAGGCGCCGCCAACTCCATCGATGGTGGCAAACTGCTTTCCCGCCACCCACTATGATTCAGAGCTGCAGGACACGTGTCGGCGAGTCAGCGTTCTCACTGCACCTGATCATCAATTCGGGACCACAAACACCTCTGCCACGTCTGACATCCAGGGGCCCACCACGCTTATAAGGTTCGGGACCACCACGGGTGACGTGTCGCTCACATTAGGTTTACGCCACGCCGGAAATATCCCCGATAAAAACCCTTCTTTCTCCCTGAGATCCGAGTTTGGAGACTGTTAG | 2100 | 53.67 | MSQQDYQQAAAAAAGFFTPFSNGFDRSSTAHQDPQQHYQHIAHQIRKEKLRLQGFHPPPHPPSLVGIDDDDDDQSAGAAALHHVYDSAGILSEMFNFPPAPPPPPPPPPQTELYGNREAMNAADSAVAMQLFLMNPNPRSPSPPPPPPAVSSTLHMLLPNPGSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSASGLLYQTHHHPQHVHVGIESSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKRSKSNLPSNSNSHGGDGAGVSSSAAKDHQPQPALSAADRIEHQRRKVDRRYNHYCEQMQMVVNSFEEVMGLGAAVAYTALAQKAMSRHFRCLKDAIVGQLKQSCEMLGDKDGGRASGITKGETPRLKLLEQRLRQQRAFHQMGIMDQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQTALCHRHSPEPSGCYFAAAAAACLPACLPAFLPAPLLALFCHYYVLKVSNWFINARVRLWKPMVEEMYQQEAKEEEEEDDDDDEDNTDEDTKTNPHQITSNALSQTPTPPSDATPPPPPPPPPPPPSHPPPFSQNQQYSSQAPPTPSMVANCFPATHYDSELQDTCRRVSVLTAPDHQFGTTNTSATSDIQGPTTLIRFGTTTGDVSLTLGLRHAGNIPDKNPSFSLRSEFGDC | 699 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 11619666 | 11623315 | + | CmoCh20G011760.1 | Cmo20g01176 | 405493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 574 | 597 | - | - | |
Cmo20g01176 | 699 | SMART | prehox3 | 239 | 368 | IPR006563 | - | |
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 269 | 312 | - | - | |
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 558 | 573 | - | - | |
Cmo20g01176 | 699 | Gene3D | - | 423 | 532 | - | - | |
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 269 | 299 | - | - | |
Cmo20g01176 | 699 | SUPERFAMILY | Homeodomain-like | 421 | 465 | IPR009057 | - | |
Cmo20g01176 | 699 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 70 | 465 | - | - | |
Cmo20g01176 | 699 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 513 | 686 | - | - | |
Cmo20g01176 | 699 | CDD | homeodomain | 420 | 528 | IPR001356 | GO:0003677 | |
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 535 | 612 | - | - | |
Cmo20g01176 | 699 | Pfam | Homeobox KN domain | 437 | 523 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 535 | 553 | - | - | |
Cmo20g01176 | 699 | MobiDBLite | consensus disorder prediction | 598 | 612 | - | - | |
Cmo20g01176 | 699 | Pfam | Associated with HOX | 245 | 367 | IPR006563 | - | |
Cmo20g01176 | 699 | SMART | HOX_1 | 420 | 531 | IPR001356 | GO:0003677 | |
Cmo20g01176 | 699 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 70 | 465 | - | - | |
Cmo20g01176 | 699 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 513 | 686 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01465 | Cmo-Chr2:8606548 | Cmo20g01176 | Cmo-Chr20:11619666 | 2.43E-87 | dispersed | |
Cmo07g00766 | Cmo-Chr7:3469757 | Cmo20g01176 | Cmo-Chr20:11619666 | 1.70E-103 | dispersed | |
Cmo15g01310 | Cmo-Chr15:9005443 | Cmo20g01176 | Cmo-Chr20:11619666 | 5.97E-80 | dispersed | |
Cmo20g01176 | Cmo-Chr20:11619666 | Cmo14g00358 | Cmo-Chr14:1624151 | 2.26E-73 | dispersed | |
Cmo07g00767 | Cmo-Chr7:3472111 | Cmo20g01176 | Cmo-Chr20:11619666 | 1.62E-41 | transposed | |
Cmo02g00570 | Cmo-Chr2:3314129 | Cmo20g01176 | Cmo-Chr20:11619666 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g01176 | - | - | cmax:111470356 | 1092.03 |