Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g01176 ATGTCACAACAAGACTACCAGCAAGCGGCGGCGGCGGCGGCAGGCTTCTTCACGCCCTTCTCCAATGGCTTTGATAGATCCTCCACTGCCCACCAAGACCCTCAGCAACACTACCAACACATAGCCCACCAGATCCGCAAGGAGAAGCTTAGACTTCAAGGCTTCCACCCGCCGCCCCATCCGCCATCGTTAGTCGGAATTGACGATGACGATGATGACCAATCCGCTGGTGCTGCGGCGCTCCACCACGTCTACGATTCGGCTGGAATTTTATCGGAAATGTTCAATTTTCCTCCGGCTCCACCGCCACCGCCACCGCCGCCGCCACAGACGGAGTTGTATGGGAATCGGGAAGCGATGAACGCAGCTGACTCAGCGGTTGCCATGCAGCTTTTTCTGATGAACCCTAACCCTCGCTCGCCGTCTCCACCGCCGCCGCCACCGGCAGTCTCGTCCACGCTTCACATGCTTCTTCCAAACCCAGGTTCAGGAGGGTCTTTCGGACAATTCACGTGGGGTGTGGTTCCGGAGCAAGAAACAGGAGACCATTCTTCCTCAAACCCTAATGAAGGCCGTCTTTCGCTGTCGTTGTCATCGTCTTTGGAGGCTGCAAAAGCTGAGGAATTGAGAATGGGTGACAGCGCCAGTGGGTTACTTTATCAAACCCACCATCACCCCCAACATGTTCATGTCGGAATTGAGTCGTCTAATCCACTGGGGGTTGTCAACTTGTTGAGAAACTCAAAGTATGTTAAAGCTGCACAGGAATTATTGGAGGAGTTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAGGAGCAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGACGGCGCCGGAGTCTCTTCCTCCGCCGCAAAAGATCATCAGCCGCAGCCAGCTTTGTCAGCAGCTGATAGAATCGAACACCAAAGGAGGAAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGAGGAGGTGATGGGGTTGGGGGCGGCGGTTGCATACACGGCGTTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAGGACGCAATAGTAGGGCAGCTGAAGCAAAGCTGCGAGATGTTAGGGGACAAAGATGGGGGAAGAGCCTCTGGAATAACAAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGCTGAGACAGCAACGAGCCTTCCACCAAATGGGCATCATGGATCAAGAAGCTTGGCGTCCTCAACGCGGCCTCCCCGAACGCTCTGTCAACATCTTGCGCGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCTAGTGATGCTGATAAGCATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAACCAGACTGCCCTTTGTCATCGGCATTCACCAGAACCCAGCGGCTGTTACTTCGCTGCCGCTGCCGCTGCCTGCCTGCCTGCCTGCCTTCCTGCATTCCTGCCTGCCCCTCTCCTTGCCCTCTTCTGCCATTATTATGTTCTAAAAGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAAGAAGAAGAAGAAGAAGATGATGATGATGATGAGGATAATACAGATGAGGACACAAAAACCAACCCCCATCAAATTACCTCTAATGCCCTTTCACAAACTCCAACGCCGCCGTCCGACGCCACTCCTCCACCACCACCACCACCACCACCACCACCACCAAGCCATCCTCCACCCTTCTCGCAAAACCAACAATATTCCTCCCAGGCGCCGCCAACTCCATCGATGGTGGCAAACTGCTTTCCCGCCACCCACTATGATTCAGAGCTGCAGGACACGTGTCGGCGAGTCAGCGTTCTCACTGCACCTGATCATCAATTCGGGACCACAAACACCTCTGCCACGTCTGACATCCAGGGGCCCACCACGCTTATAAGGTTCGGGACCACCACGGGTGACGTGTCGCTCACATTAGGTTTACGCCACGCCGGAAATATCCCCGATAAAAACCCTTCTTTCTCCCTGAGATCCGAGTTTGGAGACTGTTAG 2100 53.67 MSQQDYQQAAAAAAGFFTPFSNGFDRSSTAHQDPQQHYQHIAHQIRKEKLRLQGFHPPPHPPSLVGIDDDDDDQSAGAAALHHVYDSAGILSEMFNFPPAPPPPPPPPPQTELYGNREAMNAADSAVAMQLFLMNPNPRSPSPPPPPPAVSSTLHMLLPNPGSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSASGLLYQTHHHPQHVHVGIESSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKRSKSNLPSNSNSHGGDGAGVSSSAAKDHQPQPALSAADRIEHQRRKVDRRYNHYCEQMQMVVNSFEEVMGLGAAVAYTALAQKAMSRHFRCLKDAIVGQLKQSCEMLGDKDGGRASGITKGETPRLKLLEQRLRQQRAFHQMGIMDQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQTALCHRHSPEPSGCYFAAAAAACLPACLPAFLPAPLLALFCHYYVLKVSNWFINARVRLWKPMVEEMYQQEAKEEEEEDDDDDEDNTDEDTKTNPHQITSNALSQTPTPPSDATPPPPPPPPPPPPSHPPPFSQNQQYSSQAPPTPSMVANCFPATHYDSELQDTCRRVSVLTAPDHQFGTTNTSATSDIQGPTTLIRFGTTTGDVSLTLGLRHAGNIPDKNPSFSLRSEFGDC 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 11619666 11623315 + CmoCh20G011760.1 Cmo20g01176 405493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g01176 699 MobiDBLite consensus disorder prediction 574 597 - -
Cmo20g01176 699 SMART prehox3 239 368 IPR006563 -
Cmo20g01176 699 MobiDBLite consensus disorder prediction 269 312 - -
Cmo20g01176 699 MobiDBLite consensus disorder prediction 558 573 - -
Cmo20g01176 699 Gene3D - 423 532 - -
Cmo20g01176 699 MobiDBLite consensus disorder prediction 269 299 - -
Cmo20g01176 699 SUPERFAMILY Homeodomain-like 421 465 IPR009057 -
Cmo20g01176 699 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 465 - -
Cmo20g01176 699 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 513 686 - -
Cmo20g01176 699 CDD homeodomain 420 528 IPR001356 GO:0003677
Cmo20g01176 699 MobiDBLite consensus disorder prediction 535 612 - -
Cmo20g01176 699 Pfam Homeobox KN domain 437 523 IPR008422 GO:0003677|GO:0006355
Cmo20g01176 699 MobiDBLite consensus disorder prediction 535 553 - -
Cmo20g01176 699 MobiDBLite consensus disorder prediction 598 612 - -
Cmo20g01176 699 Pfam Associated with HOX 245 367 IPR006563 -
Cmo20g01176 699 SMART HOX_1 420 531 IPR001356 GO:0003677
Cmo20g01176 699 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 70 465 - -
Cmo20g01176 699 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 513 686 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01465 Cmo-Chr2:8606548 Cmo20g01176 Cmo-Chr20:11619666 2.43E-87 dispersed
Cmo07g00766 Cmo-Chr7:3469757 Cmo20g01176 Cmo-Chr20:11619666 1.70E-103 dispersed
Cmo15g01310 Cmo-Chr15:9005443 Cmo20g01176 Cmo-Chr20:11619666 5.97E-80 dispersed
Cmo20g01176 Cmo-Chr20:11619666 Cmo14g00358 Cmo-Chr14:1624151 2.26E-73 dispersed
Cmo07g00767 Cmo-Chr7:3472111 Cmo20g01176 Cmo-Chr20:11619666 1.62E-41 transposed
Cmo02g00570 Cmo-Chr2:3314129 Cmo20g01176 Cmo-Chr20:11619666 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g01176 - - cmax:111470356 1092.03