Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0011 ATGGCAATAAGGTTTGTTGAATTAAATTGGGGGGACGTGATAATCGCATATTTGGAAAGAAAATTAGCTCCCTTAGTCCCGCCTCCCGCGCCTGTGGCTGTGGTATATTATCCTCTATTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAAGGAGGATCCCCGACACACCAGCTCTTCTTTCACCCCTTGCTGAGCCGCAGTACTGTCGCCATCGCTTTTCACTTTCTCGCTCCACTTTACTTCGTCGGTTTCTTAATCTTTGGTATGTTGCTCTCGTTACTCGTTACTTATATCTAATCACTGCGTGGATTGTTTTCTCAATGCTGTTAAGAGAGCTGAGTAAGGGATTAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGATGAGTAGTCGATTTTCTCGTACAATATATGTTGGAAACTTGCCCTCAGACATAAAGGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGTGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA 1410 45.89 MAIRFVELNWGDVIIAYLERKLAPLVPPPAPVAVVYYPLLRPNPKPFVIPSGRCERRIPDTPALLSPLAEPQYCRHRFSLSRSTLLRRFLNLWYVALVTRYLYLITAWIVFSMLLRELSKGLEREWENHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLMSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 111685 118300 - CmPI595203_01g000110.1 Cmu01g0011 405517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0011 469 SUPERFAMILY RNA-binding domain, RBD 199 388 IPR035979 GO:0003676(InterPro)
Cmu01g0011 469 CDD RRM2_SF2_plant_like 318 393 - -
Cmu01g0011 469 Gene3D - 317 395 IPR012677 -
Cmu01g0011 469 SMART rrm1_1 319 388 IPR000504 GO:0003723(InterPro)
Cmu01g0011 469 SMART rrm1_1 201 271 IPR000504 GO:0003723(InterPro)
Cmu01g0011 469 MobiDBLite consensus disorder prediction 403 423 - -
Cmu01g0011 469 MobiDBLite consensus disorder prediction 274 309 - -
Cmu01g0011 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 275 IPR000504 GO:0003723(InterPro)
Cmu01g0011 469 MobiDBLite consensus disorder prediction 394 469 - -
Cmu01g0011 469 Gene3D - 194 314 IPR012677 -
Cmu01g0011 469 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 179 414 IPR050374 GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cmu01g0011 469 MobiDBLite consensus disorder prediction 436 458 - -
Cmu01g0011 469 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 396 IPR000504 GO:0003723(InterPro)
Cmu01g0011 469 CDD RRM1_SF2_plant_like 201 272 - -
Cmu01g0011 469 FunFam serine/arginine-rich splicing factor SR34A-like 318 395 - -
Cmu01g0011 469 Pfam RNA recognition motif 202 269 IPR000504 GO:0003723(InterPro)
Cmu01g0011 469 Pfam RNA recognition motif 320 382 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0011 K12890 - - csv:101210036 363.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0011 Cmu-Chr1:111685 Cmu03g2317 Cmu-Chr3:31806439 6.60E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127