Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0042 ATGATCAACAACAACTACAACAAGCTTCACTCCTCCCGCTCCCTCGACTCTACTCCCGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCCGCCGCTCTCGTATCCTTATCATCTCCTTCCTCTCCGTCCTCCTCATCGCTGCCTCCGTGGTCTCCGCCGCCATGCTCGTCCGGTCCCATATCGCATCGAGCCAACCCAATTTCCCTCACAACAAGCCGTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCATGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCGGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCCGGTTGATGGAGAGTGGTACACAGCCGTGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTACTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTAGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGCAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACGGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGAGAATGCGACATCTACGGTACGGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCCCGAAAGCCAATGGCGGGGCAAAAGAACACCATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGTAAGATCATTGCCACTAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTAGGTCGTCCTTGGAAATTATACTCTAGAGTGGTGTACATGGTATCTTCCATGGGCGACCATATTCATCCACGTGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCTGTGGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTTATAACTTCCACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA 1815 51.63 MINNNYNKLHSSRSLDSTPATSFHLSPNDPPPPPPSSSLRRRSRILIISFLSVLLIAASVVSAAMLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLATPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 347287 352741 - CmPI595203_01g000420.1 Cmu01g0042 405548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0042 604 Gene3D - 283 601 IPR012334 -
Cmu01g0042 604 MobiDBLite consensus disorder prediction 1 39 - -
Cmu01g0042 604 MobiDBLite consensus disorder prediction 1 24 - -
Cmu01g0042 604 NCBIfam pectinesterase inhibitor domain 59 232 IPR006501 GO:0004857(InterPro)
Cmu01g0042 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 234 IPR035513 -
Cmu01g0042 604 Pfam Plant invertase/pectin methylesterase inhibitor 86 230 IPR006501 GO:0004857(InterPro)
Cmu01g0042 604 PANTHER PECTINESTERASE 44 592 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu01g0042 604 CDD PMEI-like_3 90 236 - -
Cmu01g0042 604 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Cmu01g0042 604 SUPERFAMILY Pectin lyase-like 284 600 IPR011050 -
Cmu01g0042 604 SMART PMEI_2 82 230 IPR006501 GO:0004857(InterPro)
Cmu01g0042 604 Pfam Pectinesterase 289 586 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu01g0042 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 232 IPR035513 -
Cmu01g0042 604 FunFam Pectinesterase 283 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0042 Cmu-Chr1:347287 Cmu09g0534 Cmu-Chr9:4907670 7.10E-138 dispersed
Cmu10g0854 Cmu-Chr10:588442 Cmu01g0042 Cmu-Chr1:347287 1.50E-120 transposed
Cmu01g0042 Cmu-Chr1:347287 Cmu05g1001 Cmu-Chr5:9241125 9.40E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0042 - - - 0.0