Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0104 ATGTGGTTATTCAGAAGGAAAGGACCCTCTGGATTTTCCTCTTCTTCCACTGCCGAGGAAGTTACCGACGGGATCGATGGCACTGGTCTTACCGCCATTGTTACAGGAGCATCAAGCGGTATTGGCTCGGAAACTGCACGTGTTCTTGCATTACGTGGAGTCCATGTCATTATGGGTGTTAGGAATTTAGAAGCTGGTAGAAATGTCAGAGAAACCATTGTGAAGGAGAACCCCTCTGCAAAAATTGATGCTATGGAGTTGGATCTTAGCTCCACGGCGTCTGTAAGAAAATTTGCCTCAGATTACAAGTCGTCTGGGTTTCCACTTAACATCCTCATTAACAATGCAGGAATAATGGCTACCCCTTTTGGACTTTCAAAAGATAACATAGAGCTGCAATTTGCAACAAACCACTTGGGCCATTTCCTTTTGACAAATCTACTTTTGGAAAATATAAAGAAAACTGCCGCTGAAAGTAAGAAAGAAGGAAGAATTGTAAATGTCTCCTCGGAAGCTCATCGTTACTCATATCCTGAAGGCATTCGATTCGATGGAATTAATGATGAATCAAGGTATAATAAAATGCAGGCTTATGGCCAGTCGAAGTTATCTAATGTTTTGCATGCCAATGAACTTACAAGACGTTTCAAGGAAGAAGGATTAAACATAACTGCAAACTCACTCCACCCGGGGATAATCACCACAAATCTTTTCCGCCATTTCAATTATGGCAACGGTATAGTAAACACCGTTGGCAAACTCATGTTTAAAAATGTTCAACAGGGTGCGGCAACAACCTGCTATGTGGCATTGCATCCACAAGTAAAGGGAGTGAGTGGTGAATATTTTCAGGATAAGTATTACATGGTAAATAAGGAAGTGGATTTAGAGCCACTATCCTCAGAAATGAAGGAGCTAACCAACCAAGAGAAAAATAAGGCTGAACAAACTCAAACTAGCTCAAGTGAAGAGGAAAATGAAGCTCAACCTAGCTCAAATGAACCCCATGCTATGCCACAAGACGGATATTTCAATCGGTCAATTAAAAAATCCCAAAACGAAGCGATTCCCACATGGCGAGTGGCCGTGAAGATTGATCAGATAGAAGAGGGAGGAATGTGGTTTCTTAGCAGGAAAGGGCCATCTGGGTTTTCAGCTTCTTCAACAGCTGAAGAAGTTACAGAAGGAATCGATGGGTCAGGTCTCACAGCCATTGTTACAGGTGCATCAAGTGGCATTGGTACTGAAACTGCTCGTGTTCTTGCATTGCGTGGAGTACATGTAGTAATGGCGGTTAGAAATGTAGCAACTGGTAGGGAGGTCCAAGAAGCCATTGTCAAGGAAAACCCAACTGCCAAAGTTGATACCATGGAGTTGGACTTGAGCTCAATGGCATCTGTTCAGAATTTTGCATCAAATTTCAAATCCTCAGGTCTTCCACTGAACATTCTCGTGAATAATGCAGGAGTCATGGCTTCTCCCTTCTTACTCTCGAAGGACAAGATAGAATTGCAGTTTGCAATAAACCATGTGGGACATTTTCTTTTGACAAATCTATTGTTAGAGACATTGAAAAAGACAGCAAAAGAAAGTAACAAAGAAGGAAGGATTGTCAATGTCTCGTCCCGGCGGCACCAATTTTTGTATCGTGAAGGCATCCGGTTTGACAAAATCAATGATCGACCAAGCTATAATGGTCTTTCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTTGCAAGAAAGCTCAAGGGAGAAGGGGTGAAGATAACTGCAAATTCACTACATCCTGGAGCCATTCCTACAAACCTATTTCGTTATCATAGCATCATCAACGGTTTTCTTGGCGTTTTGGGTAAACATGTCATGAAGAATGTACAACAGGGAGCAGCGACGACATGCTATGTTGCATTACATCCACAAATCAAAGGGATCAGTGGCCAGTATTTTGCCGACAGTAACATAGCTAAACCAAGTTCACAAGCGAATGATAGTGAATTGGCAAAGAAACTGTGGGACTTCACCCAAAAGTTGATATCTAGTGGTTTGGAAATTCCTTAA 2076 41.91 MWLFRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEAGRNVRETIVKENPSAKIDAMELDLSSTASVRKFASDYKSSGFPLNILINNAGIMATPFGLSKDNIELQFATNHLGHFLLTNLLLENIKKTAAESKKEGRIVNVSSEAHRYSYPEGIRFDGINDESRYNKMQAYGQSKLSNVLHANELTRRFKEEGLNITANSLHPGIITTNLFRHFNYGNGIVNTVGKLMFKNVQQGAATTCYVALHPQVKGVSGEYFQDKYYMVNKEVDLEPLSSEMKELTNQEKNKAEQTQTSSSEEENEAQPSSNEPHAMPQDGYFNRSIKKSQNEAIPTWRVAVKIDQIEEGGMWFLSRKGPSGFSASSTAEEVTEGIDGSGLTAIVTGASSGIGTETARVLALRGVHVVMAVRNVATGREVQEAIVKENPTAKVDTMELDLSSMASVQNFASNFKSSGLPLNILVNNAGVMASPFLLSKDKIELQFAINHVGHFLLTNLLLETLKKTAKESNKEGRIVNVSSRRHQFLYREGIRFDKINDRPSYNGLSAYGQSKLANILHASELARKLKGEGVKITANSLHPGAIPTNLFRYHSIINGFLGVLGKHVMKNVQQGAATTCYVALHPQIKGISGQYFADSNIAKPSSQANDSELAKKLWDFTQKLISSGLEIP 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 903269 914747 + CmPI595203_01g001040.1 Cmu01g0104 405610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0104 691 MobiDBLite consensus disorder prediction 1 21 - -
Cmu01g0104 691 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 401 661 IPR036291 -
Cmu01g0104 691 CDD retinol-DH_like_SDR_c_like 29 285 - -
Cmu01g0104 691 MobiDBLite consensus disorder prediction 312 338 - -
Cmu01g0104 691 Gene3D - 395 688 - -
Cmu01g0104 691 Gene3D - 22 323 - -
Cmu01g0104 691 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Cmu01g0104 691 PANTHER RETINOL DEHYDROGENASE 381 684 - -
Cmu01g0104 691 MobiDBLite consensus disorder prediction 307 343 - -
Cmu01g0104 691 PRINTS Glucose/ribitol dehydrogenase family signature 593 610 IPR002347 -
Cmu01g0104 691 PRINTS Glucose/ribitol dehydrogenase family signature 570 589 IPR002347 -
Cmu01g0104 691 PRINTS Glucose/ribitol dehydrogenase family signature 529 545 IPR002347 -
Cmu01g0104 691 PRINTS Glucose/ribitol dehydrogenase family signature 479 490 IPR002347 -
Cmu01g0104 691 PRINTS Glucose/ribitol dehydrogenase family signature 403 420 IPR002347 -
Cmu01g0104 691 CDD retinol-DH_like_SDR_c_like 401 677 - -
Cmu01g0104 691 Pfam short chain dehydrogenase 31 180 IPR002347 -
Cmu01g0104 691 Pfam short chain dehydrogenase 403 543 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0104 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0104 Cmu-Chr1:903269 Cmu06g1767 Cmu-Chr6:28697200 2.00E-75 dispersed
Cmu03g2024 Cmu-Chr3:28595119 Cmu01g0104 Cmu-Chr1:903269 6.50E-10 transposed
Cmu09g0975 Cmu-Chr9:9865118 Cmu01g0104 Cmu-Chr1:903269 2.50E-23 transposed
Cmu10g2815 Cmu-Chr10:34686020 Cmu01g0104 Cmu-Chr1:903269 5.90E-99 transposed
Cmu01g0104 Cmu-Chr1:903269 Cmu07g0814 Cmu-Chr7:20695469 4.50E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126