Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0113 ATGCCGGAATCGGATAGTGGAACGCCGGTAGCATCGGCGCCGGCGACGCCGGGGACGCCGGGAGGGCCGCTGTTTTCCGGCCTCCGAGTGGATTCTCTATCGTACGATCGGAAGTCAATGCCGCGGTGTAAGTGCTTGCCCGTGAATGCTCCCACGTGGGGCCAACCTCACACGTGCTTTACTGACTTCCCTGCTCCTGATGTCTCTCTCACCCGCAAGCTGGGAGCAGAATTTGTGGGAACATTCATCTTGATATTTGCTGCGACGGCAGGGCCCATTGTCAACCAAAAGTACAACGGCGTCGAGACTCTGATCGGCAACGCCGCGTGCGCCGGCCTGGCGGTGATGATCGTAATTCTGTCAACGGGACACATTTCCGGCGCCCATCTGAACCCGTCGCTCACCATTGCTTTTGCGGCCCTCCGCCACTTCCCTTGGGTTCAAGTTCCGGCCTACATCGCCGCCCAGGTCTCTGCCTCCATTTGCGCCTCCTTCGCTCTCAAAGGTGTTTTCCACCCCTTCATGTCCGGTGGCGTCACCGTCCCCTCTGTCAGCACTGGCCAAGCCTTCGCTCTTGAATTTATCATCACTTTCAATCTCTTGTTTGTCGTCACTGCGGTCGCCACTGATACTCGCGCGGTTGGAGAGTTGGCTGGAATTGCAGTCGGAGCTACAGTGATGCTTAACATTCTTGTCGCTGGGCCCTCAAGCGGTGGTTCGATGAACCCAGTTCGAACTTTGGGCCCCGCCGTGGCTGCCGGAAATTACAGAGCATTATGGGTGTATCTGGTGGCGCCGACGCTAGGGGCAATACTCGGTGCCGGAACTTACACTGCCGTTAAGCTGAGAGACGACGAAGTGGATGCTCCGTCGCAGGTAAGGAGCTTCCGGCGTTGA 897 58.08 MPESDSGTPVASAPATPGTPGGPLFSGLRVDSLSYDRKSMPRCKCLPVNAPTWGQPHTCFTDFPAPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYNGVETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWVQVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFIITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSSGGSMNPVRTLGPAVAAGNYRALWVYLVAPTLGAILGAGTYTAVKLRDDEVDAPSQVRSFRR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 974997 979899 + CmPI595203_01g001130.1 Cmu01g0113 405619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0113 298 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
Cmu01g0113 298 PANTHER AQUAPORIN NIP2-1 68 284 IPR034294 -
Cmu01g0113 298 FunFam Aquaporin NIP2-1 60 292 - -
Cmu01g0113 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Cmu01g0113 298 Pfam Major intrinsic protein 68 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 Gene3D Glycerol uptake facilitator protein. 64 292 IPR023271 -
Cmu01g0113 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0113 298 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0113 Cmu-Chr1:974997 Cmu07g1190 Cmu-Chr7:27223965 9.70E-88 dispersed
Cmu01g0113 Cmu-Chr1:974997 Cmu01g0114 Cmu-Chr1:983076 7.10E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0113 K09874 - csv:101212651 564.688