Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0125 ATGATGGACCCGCCGGAGCCGGAGGAGGAAGCTGCCGGTGGTTCTAATAGCGGCGGCGGTGGCGGAAGAGGAGGAGGAGAAGTTGAAAGGGAACACATGTTTGACAAAGTGGTGACTCCAAGTGATGTAGGGAAATTAAATCGGCTTGTTATTCCAAAACAACACGCTGAGAGATTTTTCCCTTTAGATTCATCAACAAACGACAAGGGTTTACTGTTAAACTTCGAAGATCGAAACGGCAAATCATGGCGGTTCCGTTACTCTTACTGGAACAGCAGCCAAAGCTACGTTATGACCAAAGGCTGGAGTCGCTTCGTCAAGGAGAAACGCCTCGACGCCGGCGATATTGTCTCATTTCAACGTGGGGTTGGTGAAATTGGAAGAGATCGTCTTTACATTGACTGGCGTCGCCGCCCTGAACTCCCCATCCACCATCATCACCACCACCACTATCCCACCACCACCTCTCTCCGACCGAGCATCGTCGTCCCGAGCGGTGGTGCTACCACTTGGGGGCCATTAGTCTGGCAGCCACTCGGCGCAACAACAGCCGGATACCACCATCAGCCAGCTGCCGTAACACCGCGGGACCACACACACTTGTCGCAAATAAATAACAACAACAACAATGTGAATGGGATGTGTTGTCCGTACGGATATGGGAGTGTTGAAACAACAACTTCTGGGTTGGTGTATTTGAGGACAGAATTAGGAGGAAGATCAAGAAGGGCAACTCCAAGATTAGGGGAAGAGGAATTTGAGTTGGAAATGGAAGGGAATAATAATTATCAGATGCAGCAGGAGTATTGTAGTAACGGTGGAGGTGCTTCAATGGTGATTCTACAAGGAAATTGTATGGAAGATCATAAATTAAAAACAACAAATAATAATAATAACAACAATAATAGTGAAGAAGATATACCAGTGAAGAAATCAAGATTGAGGCTATTTGGTGTAAACATGGAGATGGAGAGTCCAATTTCATCACCTTCTTCTGATGATTGTGATTTATTATTATCTACAAACCCCAAAACCACTACTACTACCACTCAATTCCAATTGCCTTCTTCAATTTACAAGTAA 1083 45.61 MMDPPEPEEEAAGGSNSGGGGGRGGGEVEREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGEIGRDRLYIDWRRRPELPIHHHHHHHYPTTTSLRPSIVVPSGGATTWGPLVWQPLGATTAGYHHQPAAVTPRDHTHLSQINNNNNNVNGMCCPYGYGSVETTTSGLVYLRTELGGRSRRATPRLGEEEFELEMEGNNNYQMQQEYCSNGGGASMVILQGNCMEDHKLKTTNNNNNNNNSEEDIPVKKSRLRLFGVNMEMESPISSPSSDDCDLLLSTNPKTTTTTTQFQLPSSIYK 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1137977 1139059 + CmPI595203_01g001250.1 Cmu01g0125 405631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0125 360 SMART B3_2 34 139 IPR003340 GO:0003677(InterPro)
Cmu01g0125 360 ProSiteProfiles B3 DNA-binding domain profile. 34 139 IPR003340 GO:0003677(InterPro)
Cmu01g0125 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 22 321 IPR044800 GO:0003700(InterPro)
Cmu01g0125 360 Gene3D - 28 150 IPR015300 -
Cmu01g0125 360 FunFam B3 domain-containing protein 27 148 - -
Cmu01g0125 360 SUPERFAMILY DNA-binding pseudobarrel domain 31 140 IPR015300 -
Cmu01g0125 360 CDD B3_DNA 32 121 IPR003340 GO:0003677(InterPro)
Cmu01g0125 360 MobiDBLite consensus disorder prediction 1 28 - -
Cmu01g0125 360 Pfam B3 DNA binding domain 34 138 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0125 Cmu-Chr1:1137977 Cmu05g2358 Cmu-Chr5:32784659 5.30E-40 dispersed
Cmu06g0229 Cmu-Chr6:2517799 Cmu01g0125 Cmu-Chr1:1137977 9.10E-53 transposed
Cmu01g0125 Cmu-Chr1:1137977 Cmu07g0816 Cmu-Chr7:20749924 3.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5432 PF02362 B3 7.10E-29 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0125 K09287 - csv:101211271 498.819