Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0160 ATGAACCATCTGGAAAAAAACATTCTTTTTTCAGCTTTTGATCATCTCACCACTTTCAAGGAGATTGTGGTGAAGCCAATTGAAGAAATTGTGACAAACACATGCCCAAAACCAAGTGTTTCAATTTTAGAGAGGAAGATTAGACCTCAAAAGGAACAAGCTTTGAATTGTCCAAGGTGTAATTCAACCAATACCAAGTTTTGTTATTACAATAATTATAGCCTTACACAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGCTCCTTAAGAAACATTCCTGTTGGTGGAGGCTCAAGGAAGAACAAAAGACCTTCTTCTTCATCATCATCTACATCTCCCACACCTTCTTCATCTCAACCTATTCCCAAGAAAATTCTTGATCTCCCTCAAAACCCTAAATCCACCCAAGATCTCAACTTGTTCTTCCCACCCTCGAACCATCAAGATCATCATCATTTCATCACCAATAGCCACCCCGAAATCGTTGCCCCTGCGATTGCCAGTTCCTCATCAGCCTCTACTGTTGCGACGGCGGCGGTGTCGTCGTCGCCTTCGGCCCCATCGCATCATCATCCGCTTTCGGCAATGGAGCTTCTCGCCGGGATGGCGAACAACAACAACAACAATTCTAGGGGTTTGAATTGTTTCTTTCCAATGTCGTCTGTTGTTGTCCCTGATCCAGCTGGCTCCCTTTACACGGTAGGGTTTCCCGATCTCCATGATCAGTTCAAGTCAAACCTCGGATTATTCTCTCTTGATGGCTACAGCGTTGTCCCGACCGAGGGAAGCAAGGGTGGGGGGAGGCTTATGCAGCTGCCATTTGAGGATTTGAAGCAAGGGTCTAATGGAGGAGTTGAACAAGGCAAAGAGCAAGGAGAGCATAATTCAAGTGGGTATTGGAATGGAATGTTGGGTGGAGGATCATGGTAA 948 44.94 MNHLEKNILFSAFDHLTTFKEIVVKPIEEIVTNTCPKPSVSILERKIRPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRPSSSSSSTSPTPSSSQPIPKKILDLPQNPKSTQDLNLFFPPSNHQDHHHFITNSHPEIVAPAIASSSSASTVATAAVSSSPSAPSHHHPLSAMELLAGMANNNNNNSRGLNCFFPMSSVVVPDPAGSLYTVGFPDLHDQFKSNLGLFSLDGYSVVPTEGSKGGGRLMQLPFEDLKQGSNGGVEQGKEQGEHNSSGYWNGMLGGGSW 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1566680 1568320 - CmPI595203_01g001600.1 Cmu01g0160 405666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0160 315 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g0160 315 MobiDBLite consensus disorder prediction 96 146 - -
Cmu01g0160 315 MobiDBLite consensus disorder prediction 284 315 - -
Cmu01g0160 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 191 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0160 315 MobiDBLite consensus disorder prediction 290 309 - -
Cmu01g0160 315 Pfam Dof domain, zinc finger 53 109 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g0160 315 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g0160 315 MobiDBLite consensus disorder prediction 106 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0160 Cmu-Chr1:1566680 Cmu02g2076 Cmu-Chr2:34451660 7.20E-33 dispersed
Cmu01g0160 Cmu-Chr1:1566680 Cmu01g0027 Cmu-Chr1:216212 2.20E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5434 PF02701 zf-Dof 4.70E-33 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0160 - - - 0.0