Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0161 ATGAGTAAAGTAAAAGTATTCTTTGCCTCCGCATCTGGTAACTCCTCTGGAAAGAAGAGTCCAAAGAGAGGAAGAGCCCCAGATGGGTTTGACCCGAGTTTTGGGGTGACCCAGTCAGGATGCCATGGATTTGAATCGAAGAGGAGGGGTCAAGAGAGAGAACAGATGATGGATTTGATTTACCGTGAGGAGGAAATTGAAAGATTCTACGACACCCGTGAGGAGATCTCCTCTGTGTCTGATTGGGGATCTGATTGCTCTGAGAACTGCAGCACAAGTTTTGGGGATGACGGTGATATTCCTGAAAGTTTAAGATACGTGGGATGGATAGGTAATCTGGAAAGTGTTTGTGAGCGAAGAAACAAGTTCTTCAAATGGATGGGTTTGGATTTGAATCAGACTTTTGACGACAGAGATGAAGAGGAAGGGGATTCGTTCAGGAGGGTTTATCGTGATAGAATTCTGGAAGATTGTGGAACGGTGTTGAGACTTTCCGGTTCTGAAGAGGAGTTGTCTTCAAGTCTTACTATGTCTTCCATGTCAAATGAAGCTCCAGAATCATCAGGAAATGTTTCGGTGGAGGAGAATCATGTTTATACTATCAGGAATTTGGACAATGGGACTGAGTTTATTGTGGATAGTTTCAGTCAAGATGGAGTGTTGAGCATGTTACGTGAAGTTGGTTCAAACCGATCCTTCAGTTTTGATGAGTTTGAGAGAAACATTGGGCAGTCTCCCTTGGTTCAGCAATTCTTTCGCAAAAATGTTGAAAAGGCTGGGCCTATAGTCAATGCCAGGAAAGAGGCAAAGAAGGGTTGGCTGAGAAAATTGGGTGCGGTTGCTTGTATAGTTGACAATGGGGTGGGCGCAATGAAAAACGGTGTTTCCAATTCTTCACCTAAGGCAGGGATACAACAAGTTCGCGTTCATCCATATAAAAAGCAATCCAAAGAATTATCATCCCTTTTTGTGGGACAAGAATTTGAAGCACACAAAGGGTCAATTTCTACAATGAAGTTCAGTTTTGATGGAAGATACTTGGCTACTGCTGGTGAAGATGGTGTTGTGCGTGTATGGCAGGTGATTGAAGATGTGAGATTCGATAATTTCGACATTCACAATGTTGATCCTTCCTCTTTGTACTTCTCAATGAATCATTTGTCCAAATTAGACCCCTTGGATGTACCAAAAGAGACTGTAGGCAAGACAAAATTGAAGAGATCATCAAGCACAGCCTGTGTAATTTTTCCACCAAAGCTATTTAGGATATTGGAGAAACCTCTGCATGAGTTCTTGGGACACAGTGGCGAGGTCTTGGATCTATCTTGGTCAAAGAAAGGGCTTCTGCTGTCATCTTCTGTTGATAAGACAGTACGCCTTTGGCAGCTGGGATGTGACACATGCCTAAGAGTTTACTGTCATAATAATTATGTTACGTGCGTTAGTTTCAATCCTATAGATGAAAATCATTTCATAAGTGGCTCAATAGACGGTAAAGTTCGGATTTGGGAAGTTCTTGCTTGTCAAGTGGTTGATTATATCGATATCCGTGAGATAGTAAGCGCAGTCTGTTACAGACCAGATGGAAAGGGAGGAATTGTGGGGTCCATGACTGGAAACTGCCGTTTTTATAACATTATAGATAATCGATTGGAGCTGGATGCTCAGATATGCTTAAATGGGAAAAAGAAGTCGCCTGGGAAGAGAATAATTGGTTTTGAGTTTTCTCCTAGTGACCCGAGTAAACTAATGGTCTGTTCTGTTGATTCGCCGGTTCATATAATTTCCGGGAGTGATGTCATTTGCAAATTCAAGGGTCTTCGTAATGGTGGAAACAAGATGTCTGCTTCTTTTACCTCGGATGGAAAGCATATTGTTTCAGCCAGTGAAGAAAACGTCTACGTTTGGAACTACAATTGCAAGGACAAAGCATCTTGGAAAAAGAAAATTTGGTCGTCCGAAAGTTTCTTCTCTCGTAGCGCATCAATAGCCATACCTTGGTCTGGTGTGAAAATCACACCTGAACCACCATTGTCCCCAACACGAGTTTGCGATACAGCGGGAAGTATCCCCGAAATGGAGCCGAAGTATCCTGATGACGATGGTGATAGAGAACACAAGGTTCCGTCATCATCACCAGATTGCTTCTCTCTAAGTCGCACTCTTTTTCCCGAGTTGCTCAAAGGAACTGCAACTTGGCCGGAGGAGAAACTCCATGATTCTAGCTCAATGATCCCTTCCCCTTCAATGTGCAAGACTGAGTTCAAGTTTTTGAAGAATGCTTGCCAGAGCATGCTTAGCTCTCCGCACATGTGGGGTCTTGTGATCGTAACTGCTGGATGGGACGGACGAATCAGAACATTTCTCAACTACGGTTTGCCTATTCGGTTATGA 2394 43.11 MSKVKVFFASASGNSSGKKSPKRGRAPDGFDPSFGVTQSGCHGFESKRRGQEREQMMDLIYREEEIERFYDTREEISSVSDWGSDCSENCSTSFGDDGDIPESLRYVGWIGNLESVCERRNKFFKWMGLDLNQTFDDRDEEEGDSFRRVYRDRILEDCGTVLRLSGSEEELSSSLTMSSMSNEAPESSGNVSVEENHVYTIRNLDNGTEFIVDSFSQDGVLSMLREVGSNRSFSFDEFERNIGQSPLVQQFFRKNVEKAGPIVNARKEAKKGWLRKLGAVACIVDNGVGAMKNGVSNSSPKAGIQQVRVHPYKKQSKELSSLFVGQEFEAHKGSISTMKFSFDGRYLATAGEDGVVRVWQVIEDVRFDNFDIHNVDPSSLYFSMNHLSKLDPLDVPKETVGKTKLKRSSSTACVIFPPKLFRILEKPLHEFLGHSGEVLDLSWSKKGLLLSSSVDKTVRLWQLGCDTCLRVYCHNNYVTCVSFNPIDENHFISGSIDGKVRIWEVLACQVVDYIDIREIVSAVCYRPDGKGGIVGSMTGNCRFYNIIDNRLELDAQICLNGKKKSPGKRIIGFEFSPSDPSKLMVCSVDSPVHIISGSDVICKFKGLRNGGNKMSASFTSDGKHIVSASEENVYVWNYNCKDKASWKKKIWSSESFFSRSASIAIPWSGVKITPEPPLSPTRVCDTAGSIPEMEPKYPDDDGDREHKVPSSSPDCFSLSRTLFPELLKGTATWPEEKLHDSSSMIPSPSMCKTEFKFLKNACQSMLSSPHMWGLVIVTAGWDGRIRTFLNYGLPIRL 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1600276 1605224 + CmPI595203_01g001610.1 Cmu01g0161 405667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0161 797 PANTHER WD REPEAT DOMAIN 44 67 797 IPR040324 -
Cmu01g0161 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 505 - -
Cmu01g0161 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 431 463 - -
Cmu01g0161 797 Gene3D - 312 656 IPR015943 GO:0005515(InterPro)
Cmu01g0161 797 Pfam WD domain, G-beta repeat 426 461 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 Pfam WD domain, G-beta repeat 467 503 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 Pfam WD domain, G-beta repeat 326 359 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 MobiDBLite consensus disorder prediction 694 710 - -
Cmu01g0161 797 SUPERFAMILY WD40 repeat-like 325 787 IPR036322 GO:0005515(InterPro)
Cmu01g0161 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 431 463 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 361 - -
Cmu01g0161 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 361 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 MobiDBLite consensus disorder prediction 9 33 - -
Cmu01g0161 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 505 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 SMART WD40_4 465 504 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 SMART WD40_4 506 545 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 SMART WD40_4 321 360 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 SMART WD40_4 556 596 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 SMART WD40_4 424 462 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 SMART WD40_4 597 637 IPR001680 GO:0005515(InterPro)
Cmu01g0161 797 MobiDBLite consensus disorder prediction 689 713 - -
Cmu01g0161 797 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Cmu01g0161 797 PRINTS G protein beta WD-40 repeat signature 449 463 IPR020472 -
Cmu01g0161 797 PRINTS G protein beta WD-40 repeat signature 491 505 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0161 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0029 Cmu-Chr1:248471 Cmu01g0161 Cmu-Chr1:1600276 1.90E-146 dispersed
Cmu01g0161 Cmu-Chr1:1600276 Cmu11g1813 Cmu-Chr11:30237402 1.20E-105 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g208 . . . . . . . . . . Cma02g00931 Cma15g01305 Car02g00680 Car15g01175 . . Cpe05g00780 . . . . . . . . . . . . . . . . . . . Csa05g00028 Chy09g01316 . . . Bda07g01942 . . . . . . Cmo02g00940 Cmo15g01372 . . . . . . Bhi12g00103 . . . . . Lcy12g1541 Cla01g00160 Cam01g0166 Cec01g0164 Cco01g0167 Clacu01g0162 Cmu01g0161 Cre09g2345 Lsi09g00152 . . Cme09g01865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009425 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 4 3 2 34