Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0169 ATGGAGGTGGGTTTGGTTCCAAGTGGGATACAGGAGGAAGAAACTGCAGAGGCTTATGATATCAATTATGAGATTTCTGATGAGGTGGAAAGATGTGGGATATGCATGGATGTCATTGTTGACAGGGGTGTTTTAGACTGCTGCCAGCACTGGTTCTGTTTTGTATGCATTGATAACTGGGCTACTATTACGAACCTTTGTCCACTTTGCCAGAAAGAATTTCAACTCATCACATGTGTTCCAGTGTATGATACTATTGGGAGCAACAAAGTAGATGAAGAATCATTTAGCAGAAATGATGATTGGTGCTTTGAGGGGAAGAGTAACATCTCCTTTCCGTCATACTACATTGACGAGAATGCAGTTATCTGCTTGGATGGTGACGGCTGTAAGATTAGAAATGGATCTGTATTTACTGAAGGAGAATCTGATCTTGATACCTCAATTGCTTGTGACTCTTGTGATACATGGTATCATGCATTCTGTGTTGATTTTGATCCTGATGATACATCTGAAAGTACATGGTTATGCCCAAGATGTGGGGTTAATGATCAAGAAAGTTCCATCAATGATTCTGTTCCAAAGTTTAACAGCGACTTTGATTCAATGAATGCTTCAGCTGCACAAAGTTTTTCCAGAAAGGTGTCTGTATCCATTGCTGATACTGGAGAGACAGCATTGGTTGTCTCCATGATTGGAGGAAATCATGTTAAAGAAGAACAAACTGATTACAGCCCCTCAACTGATGAAATTGAAAATAATAAAAAAATTGAAGATTTCATGTTAGCTTCTGAAGCTGGTAGGTCAAGTGTATCTGCATCACCATTGGAGAATACTCCCGTTCTGCCAACCCCATCAATGGAGAATACTTCTGTTGTGCCAGCACTTGGGGACAAAGAATTGGAACTTTCTCTGTCACATGATTCTTCCATCAGTTTGCCTCATGATTCCTTTAGGCATGTTGGGTTGAAAACAAGTTGTGCTGATGAAATCAAGACTGAATCAAGTAGCCTTGAAAGCATCAGAAGTTTTTCAAATGTATCCCATCCTATAAACAAAGTGTCTAAAGATGAATTCGGCATGGGTCTTCATCTTGGTTTACCTGTGGGCACATTCTTGTCTGTTGATTACTCAAATGATGAAAGTGGTGATCTAAGTGTTGATGTTAAGCCACAGTTTCCTTCAGAAGAACACTTATTACAAGCTGATAATGTCGCATCACAAACCATCCAGGAAGCCTCTGTAATCATTGGCATAAAGAGGAAACGCACAGATTGCAGTGACCACATTCAGAAGATGGCTGACGATCTAGATGATAAAGGAAATTCTGATACGACACTTGTTAAGGGGAAGAACCAACCAGTTCCTTCTAAAAACGACTTGGAGCAAACTAAGCAAGATGACACTACAAAGGGTTTGGCTATGCCATTAGTTCCTACAGAAGCCAGCTTGAAACGAATATCAAGAAAAAAAGATGCCAATGCTGATATAATGAGTATAGTTAGGGGCCGAAACCGTAGGCCTCCTCCCAAAAGCCGGGCAAGCTCAAATTCTAATGATGAAGAGACAGATCAGCAAGAAAATTTGACTGGTTTGAGAGTCAAAAAGATCATGAGAAGAGCCGGCGAGGATCAGGAATCATCCATGCTAGTTCAGAAACTGAGAAATGAAATTAGAGAAGCAGTCCGCAACAAATGTTCAAAAGAGTTTGGGGAAAAGCTTTTGGATTCTAAGCTTCTTGATGCCTTTAGAGCTGCAGTATCAGGCCCTAAAACCGAATCCCAGAAAAGATTAACAGCTTTGGCTGTTAAGGCAAAAAAATCATTATTGCAAAAGGGGAAAATACGCGAGAGTTTAACAAAGAAAATATATGGGGCTACTAATGGAAGAAGAAAGCGTGCATGGGACAGAGACTGTGAAATTGAATTCTGGAAGCATCGTTGCATAAGAGTGAGAAAACCTGAAAAGATTGCAACTTTAAAATCTGTCCTTGACCTCTTAAGAAATGGCTCACGGAGCCCAGATGCAAAACAAGATTCTGAAGGTCAGCCCACAAATCCAATTCTTTCTCGATTATATGTAGCAGATACATCTGTCTTCCCACGGAATAATGACATCAAGCCTCTCTCGGCTCTCAAATCTTCCTCTTCTTTGGAGCAGAAGAAAGATCCACTCACAGGGATTAGCAAGGTTTCATCAAAGGCTGGTATTCCTTTGGCAGGAAATGTGGGGAATAATTGTTCTGTATCTGCCTCAAAGGGTGCAGTAGGTTCTGGAAAAGGAAATTATAGTGCGAACTCAGAAGCATCAGTTGGTTCTAAACCTAGACCACAGAAAACAGTGCCTTCTACATCTAATAATGCAATTGATAAAAGAAAATGGGCTCTAGAAGTTCTTGCTAGGAAAACTGGTGATGGCTGCAGTGCAGCGAATAAGAAGGAGGAAGACATGGCTGTGCTTAAAGGAAATTATCCTTTGCTTGCTCAGCTACCAATAGACATGAGACCCAAATTGGCACCCAGTCGCCATAATAAAATTCCCGTATCAGTAAGGCAGGCACAGCTTTATCATCTGACAGAGCAGTTTTTGAAGAAAACAAATTTGACAGACATGCGCAGAACTGCAGAGACAGAGTTGGCAATTGCAGATGCGGTTAACATAGAAAAGGAGGTTGCTGATAAGTCAAACACCAAAGTCGTTTATCTTAATCTATGTTCCCAGGAGATATTGCATCGCACAGGCACTGGCAGATCAAATACAGCAGCAGATTTGGATTCCTCATCCCAGGCAAATGAGCCAATTGCTGAATCCGAACTGGCAAGTGTTTCAGAAACAGATCCTGCAGTTGAAGAAGCACTTAGAAATGCTGGTCTTTTATCTGATTCGCCTGTGAATAGCCCCCCACACAGAACTGATGTCAATGATGATGATGAACCTGTGGAAGAGTTGGAACCTGAAAACATAATCGAAATGGATGACCATCCAGATTTGGATATCTATGGTGATTTTGAGTATGATCTAGAAGAAGAAAACTGCTTCACCACCAAAGCTACTAAGGTTGTGAAACCACCAGATGAAGGCGAATCCAAATTGAAAGTTGTTCTATCCACTCTAAACACTGAAAGTTCAATTCATGCATCAGATGCCGAGAAGCCTGAGAGGTTGGAGAGTGTTGAACTTCCAAAGGATGCTTCTTGTTTGTTGAAAAATGAAGTTGATTTGGAGGTTGGAACCGCCCCTTTGGAGGGTGAGAATGGTGGGTCTGTTGCTGTTCCGCTGAACAGTAACGAAGTTGAAGAGCCTTCCTTGGCAGAATATGAAGAACTATATGGGCCAGACACAGATCCACAGATAAAGAATCTTCCAGGGGAAGCATCAACAGATAAGCCTTGTGTACCTACTTCAGAATTGGGTTCCGAGCAGAAAGATTCTTGTAATGATGGAACTTCTATGCCAATTCAAGGTGGAAAAGAATCGGACTTGAAATGTGAGGAGGTAAAAGGAGCGAATCCCCCTGCTGTTCAGTGTTCTCCCCACAGGAAGGAGAAATCTAATGCCGATGACAATAAGCAGTCTGATGGCAACAATTCCGTATCTAAGAAGGTTGAAACGTACATCAAGGAGCACGTCAGACCGCTGTGCAAGAGTGGGGTCATAACAGCTGAACAATACAGATGGGCAGTCCAGAAAACCACTGAGAAGGTTATGAAGTACCATTCCAAGGATAAGAATGCAAATTTTCTTATCAAGGAGGGGGAGAAGGTGAAGAAGCTTGCAGAACAAAGCTCTATGTACGTCGGTGAAGGGGTGCTGGTTAGGATCTATAGTACAGCTAGGTTGATCCTTGCAACAAATAGGAGTTCCATATTTGTTCACTGCAAATTTGTAATTTGGAGAAGAGGTGAGTTGAGGATGCAGAACTCTCGAGATGATCTGTTGTGCATCAGATATCGGACCAAGAAGAGGAGCAGAAACAATGGCAAGAAAGATCCCAACAACCAAAACCAAAACAACTGCATTAACAAAAGAACCAGTTTCTATGACTTCTTCTGGTCTTTGCTCTTTTCCCTCTCTTGTCTTGTCTGCTTGTTATACTCCGAGCTCGTCCTTGGCTATGGCGACGCTGGGGATTCTTCTTCTTCTGTAAACAGAAGCACTTTTTGTCATAGTCATGGAAATCAGAAGTTATGTGATCACGCTTGTTCATCCATAGCAAATGAAAGCAATAGTATGAACTCTGGATCGTCTTTTGAACTTAATGTGTCAGTGAACTGTAATGAATCCTATGTTCATCATATCTACGCAAATTCCAATTACTCACTTCCAGAGTCAAAGGCATTTGAAGAAGCAGTAATGAGTGCACTAGGATATTCATCTTTGATGTGTAAAGTACAACAGCCAGAGAAGAAACCAAGCTCAACAGAACATCAGGAAGGTCCTAGTGGCAGAAGTTCTCGCCCCACATATCTTAATTTGGATGAATTTCGCAACATTACGATGAAAGATAAAGAAGGAAAAATGCCCAATCAGTTAGTTAACATCACTCATCGGCTTGAACCAGATGGATCGGATTACAACTATGCATCTGCATCGAAAGGTGCAAAGGTGGTTGCTCATAACAAGGAGGCAAAAGGAGCATGTAATATATTGGAGAAAGACCATGATAAGTACCTGAGGAATCCTTGTTCTGTGGGAGGGAAATATGTTGTGATTGAGCTCTCAGAAGAGACCTTAGTTGATGCTGTGAAAATTGCAAATTTTGAGCATTATTCTTCTAATTTCAAGGAATTCAATTTGTCTGGCAGTTTGAGCTATCCAACTGAGACATGGTCTAACTTGGGAAACTTTGTTGCTGCTAATGTAAAACATGCACAAGTTTTCAAGCTGCCTGAACCAAAATGGGTTAGGTACTTGAAGCTGGATCTGCTTAGTCACTATGGATCAGAGTTTTACTGCACACTGAGTATAGTAGAAGTCTATGGTATTGATGCCATGGAGAGGATGCTTGAAGATCTCATTGTCACCTCTTCAGAAGCTGCTCCCAAGAAAATTTCACTTGAAGAGCCTGATTCAACTGTGTCGCCTTCTTTAAAATCAGATGTTGGCCCAGCTAATGAGATAGAAAATGATGAAAACAACTTGTCGAGTGCTGGTGCAGGGGCAGAAAGCATGGATGATCCGACGAGTCTTGCTATAGAGGTTGCAAAAAATCCTGTGAATGTTAACAAATTTCCTAATCCTATAATTGAAGCTAGACAACAGCTGAACGGTAGAATACCTAGCGACACTGTCCTGAAGATCTTGATGCAAAAGGTGAGGTCACTTGAGACTAATTTGTCTGTGCTAGAGGAGTATATCAAAGAACTGAACCGACGCCAAGGGAAACATTTACCAGATCTTGAAAAAGAGATAGTTAGAATTTCAATGCTTCTGGAGAATACTAAGTTAGTTATCAAGGATCTGATGGTTTGGAAGGAGACGATTGAAAAGGAAATTGCTCACTTCAAATCATGGAAGATGGCTGCTACGTCTCAGATGAATGAATTGGTCAGAGAGAATAATATGATCAGCTTAAATATTGAAAAAATATTGAGCAACCAAGCGAAGCTGGAAAGTAAAGAACTCGCAGTGCTAGCCGTGAGTTTTCTTTTCATGTGCATTGCAACTCTGAGGCTACTATCAGCTAAAATTATCATGTTTTTTGGAGACTGTCATTCGGAGAAGACGTGCTCGACCAGCGGGGGTTGGGTATGGATACTTGTTAGCAGCATGATGACGGTAATCCTGGCCTTCATATATAGTTAG 5805 41.31 MEVGLVPSGIQEEETAEAYDINYEISDEVERCGICMDVIVDRGVLDCCQHWFCFVCIDNWATITNLCPLCQKEFQLITCVPVYDTIGSNKVDEESFSRNDDWCFEGKSNISFPSYYIDENAVICLDGDGCKIRNGSVFTEGESDLDTSIACDSCDTWYHAFCVDFDPDDTSESTWLCPRCGVNDQESSINDSVPKFNSDFDSMNASAAQSFSRKVSVSIADTGETALVVSMIGGNHVKEEQTDYSPSTDEIENNKKIEDFMLASEAGRSSVSASPLENTPVLPTPSMENTSVVPALGDKELELSLSHDSSISLPHDSFRHVGLKTSCADEIKTESSSLESIRSFSNVSHPINKVSKDEFGMGLHLGLPVGTFLSVDYSNDESGDLSVDVKPQFPSEEHLLQADNVASQTIQEASVIIGIKRKRTDCSDHIQKMADDLDDKGNSDTTLVKGKNQPVPSKNDLEQTKQDDTTKGLAMPLVPTEASLKRISRKKDANADIMSIVRGRNRRPPPKSRASSNSNDEETDQQENLTGLRVKKIMRRAGEDQESSMLVQKLRNEIREAVRNKCSKEFGEKLLDSKLLDAFRAAVSGPKTESQKRLTALAVKAKKSLLQKGKIRESLTKKIYGATNGRRKRAWDRDCEIEFWKHRCIRVRKPEKIATLKSVLDLLRNGSRSPDAKQDSEGQPTNPILSRLYVADTSVFPRNNDIKPLSALKSSSSLEQKKDPLTGISKVSSKAGIPLAGNVGNNCSVSASKGAVGSGKGNYSANSEASVGSKPRPQKTVPSTSNNAIDKRKWALEVLARKTGDGCSAANKKEEDMAVLKGNYPLLAQLPIDMRPKLAPSRHNKIPVSVRQAQLYHLTEQFLKKTNLTDMRRTAETELAIADAVNIEKEVADKSNTKVVYLNLCSQEILHRTGTGRSNTAADLDSSSQANEPIAESELASVSETDPAVEEALRNAGLLSDSPVNSPPHRTDVNDDDEPVEELEPENIIEMDDHPDLDIYGDFEYDLEEENCFTTKATKVVKPPDEGESKLKVVLSTLNTESSIHASDAEKPERLESVELPKDASCLLKNEVDLEVGTAPLEGENGGSVAVPLNSNEVEEPSLAEYEELYGPDTDPQIKNLPGEASTDKPCVPTSELGSEQKDSCNDGTSMPIQGGKESDLKCEEVKGANPPAVQCSPHRKEKSNADDNKQSDGNNSVSKKVETYIKEHVRPLCKSGVITAEQYRWAVQKTTEKVMKYHSKDKNANFLIKEGEKVKKLAEQSSMYVGEGVLVRIYSTARLILATNRSSIFVHCKFVIWRRGELRMQNSRDDLLCIRYRTKKRSRNNGKKDPNNQNQNNCINKRTSFYDFFWSLLFSLSCLVCLLYSELVLGYGDAGDSSSSVNRSTFCHSHGNQKLCDHACSSIANESNSMNSGSSFELNVSVNCNESYVHHIYANSNYSLPESKAFEEAVMSALGYSSLMCKVQQPEKKPSSTEHQEGPSGRSSRPTYLNLDEFRNITMKDKEGKMPNQLVNITHRLEPDGSDYNYASASKGAKVVAHNKEAKGACNILEKDHDKYLRNPCSVGGKYVVIELSEETLVDAVKIANFEHYSSNFKEFNLSGSLSYPTETWSNLGNFVAANVKHAQVFKLPEPKWVRYLKLDLLSHYGSEFYCTLSIVEVYGIDAMERMLEDLIVTSSEAAPKKISLEEPDSTVSPSLKSDVGPANEIENDENNLSSAGAGAESMDDPTSLAIEVAKNPVNVNKFPNPIIEARQQLNGRIPSDTVLKILMQKVRSLETNLSVLEEYIKELNRRQGKHLPDLEKEIVRISMLLENTKLVIKDLMVWKETIEKEIAHFKSWKMAATSQMNELVRENNMISLNIEKILSNQAKLESKELAVLAVSFLFMCIATLRLLSAKIIMFFGDCHSEKTCSTSGGWVWILVSSMMTVILAFIYS 1934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1648398 1672539 + CmPI595203_01g001690.1 Cmu01g0169 405675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0169 1934 Pfam Sad1 / UNC-like C-terminal 1539 1661 IPR012919 -
Cmu01g0169 1934 ProSiteProfiles Zinc finger RING-type profile. 32 71 IPR001841 -
Cmu01g0169 1934 SUPERFAMILY FYVE/PHD zinc finger 145 181 IPR011011 -
Cmu01g0169 1934 Gene3D - 1542 1672 - -
Cmu01g0169 1934 ProSiteProfiles SUN domain profile. 1504 1664 IPR012919 -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 754 787 - -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 916 979 - -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 1169 1198 - -
Cmu01g0169 1934 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 187 IPR013083 -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 434 533 - -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 1465 1488 - -
Cmu01g0169 1934 SUPERFAMILY RING/U-box 25 77 - -
Cmu01g0169 1934 PANTHER MEMBRANE PROTEIN CH1 RELATED 1351 1909 IPR045120 GO:0005737(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0034975(PANTHER)
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 1111 1157 - -
Cmu01g0169 1934 SUPERFAMILY Galactose-binding domain-like 1563 1660 IPR008979 -
Cmu01g0169 1934 Pfam PHD-finger 144 180 IPR019787 -
Cmu01g0169 1934 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 108 IPR013083 -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 1684 1723 - -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 916 938 - -
Cmu01g0169 1934 Pfam Ring finger domain 31 71 IPR001841 -
Cmu01g0169 1934 ProSiteProfiles Zinc finger PHD-type profile. 64 183 IPR019787 -
Cmu01g0169 1934 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 268 287 - -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 1132 1153 - -
Cmu01g0169 1934 Coils Coil 1765 1792 - -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 510 525 - -
Cmu01g0169 1934 SMART PHD_3 129 181 IPR001965 -
Cmu01g0169 1934 SMART ring_2 121 180 IPR001841 -
Cmu01g0169 1934 SMART ring_2 32 70 IPR001841 -
Cmu01g0169 1934 MobiDBLite consensus disorder prediction 446 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0169 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0169 Cmu-Chr1:1648398 Cmu11g0883 Cmu-Chr11:11777487 5.00E-92 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g155 . . . . . . . . . . Cma02g00925 . Car02g00673 . . . Cpe05g00787 . . . . . . . . . . . . . . . . . . . Csa05g00188 . . . . . . . . . . . Cmo02g00933 . . . . . . . . . . . . . . Cla01g00171 Cam01g0175 Cec01g0173 Cco01g0176 Clacu01g0171 Cmu01g0169 Cre09g2336 Lsi09g00159 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009633 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5436 PF07738 Sad1_UNC 7.60E-33 CL0202 Cmu TR