Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0183 ATGGCTTTCTTTCCACCCCATCTTCCTCCCATTCCCTTTTCTTCATTAACCCTCTTCCATTTCTTCCTAATCATGCCATTGCTCCCTCCCGCCGCCACGTCGTTGCCGGAAGTCTTCTCCCCCCCCCTCGCCGATAAGGGCCCTGTCATTCCGGTCACCAATCTCGTCAAGTTCCTTGAGCGTCTTCAAGTTGTGGCCCTCAACTCCTTCGGTAAATTGGATTTCGATCTTAAATACTACGTCGATTTGTCTCTGAAATTCGATTTGAATTCTACCCAAACCGCTTTCGATGCCCTTGAACGATCCTCCAATGGCTCTGTCTCCGTCGAGAATTTGAAGGCCTTCATTACTGACTATTTCGATAGTGCTGGAGCCGACTTGGTTTACTCTGAGCCGGTTGATTTTGTCCCTCAGCCTGTTGGTTTCTTGCCTAAAGTTGAGAATGTGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTCTGGAAGAATCTTAGCCGTAGAGTCTCCGATGATCTCATTCATCGGCCGGATACCCACACTCTGCTGCCGTTGCCGGAGCCCGTTGTCGTTCCAGGAGCCAGATTCCGGGAAGTTTACTATTGGGATTCCTATTGGATTATCAGAGGTTTGCTAGCTAGTAAAATGTATGATACTGCAAAGGGAATTGTTATTAATCTCATTTCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCCAGATCTTACTACACCAACAGAAGTCAGCCTCCCCTTTTGAGTTCAATGGTTTATGATATATACCTTAGGACAGGGGATTTAGAGTTTGTGAGCAATGCACTCCCAGCCTTAATTAAAGAGCATAAGTTTTGGAATTCAGGACTCCATTCCATTACTGTCCGGGATGCTCCTGGTGGAAATGGAAATCACTCTTTATCTAGATACTATGCAATGTGGAACGAGCCGAGGCCAGAATCGTCACTGCTGGATGTGAAACTTGCCTCAAAGTTTGTTAATAACTATGAGAAACAACATCTATACCGGGAAATTGCATCGGCAGCTGAATCCGGTTGGGATTTCAGTACAAGATGGATGAGGGATCCAACAGACTTATCAACATTGGCTACCACTTCAATCCTGCCAGTTGATCTTAATGTATTCATACTCAAGATGGAACTGGACATTTCCAATTTGGCAAGAGCTGTTGGAGATTACTGCACGGCAGAACAATTCTTTGAGGCTTCTCTAGTCAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTTGATAATGGCTCATACAAGGGTGCTCATACATGGGATGCTCGAAACCAGAACCAAAACGTATATGCTTCGAACTTCATTCCGTTGTGGATCGAATCATTCTACTCCGATAAGAAACAAATGAAGAAAGTCTTGAAAAGTTTACGAAACTCAGGATTATTGTGCAATGCTGGGATTGCAACTTCAATGATTAATTCAGGAGAACAATGGGATTTCCCAAATGGTTGGGCGCCAATCCAACACATGATCGTCGAGGGACTGGCAAGGTCTGGATTGAAGGAAGCAAGGGCATTGGCCGAGGACATTGCTGCGAGATGGCTTCGAACCAACTATGTAGCTTACAAGCACACAGGATATATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGGTGGAGGTGAATATGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCATTCCTCGAAGAGTTTGGATGGCCGGAAGATCAAAAGATAGACTGCTACTTAACTTATTAA 1815 44.41 MAFFPPHLPPIPFSSLTLFHFFLIMPLLPPAATSLPEVFSPPLADKGPVIPVTNLVKFLERLQVVALNSFGKLDFDLKYYVDLSLKFDLNSTQTAFDALERSSNGSVSVENLKAFITDYFDSAGADLVYSEPVDFVPQPVGFLPKVENVEVRAWALDIHNFWKNLSRRVSDDLIHRPDTHTLLPLPEPVVVPGARFREVYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVSNALPALIKEHKFWNSGLHSITVRDAPGGNGNHSLSRYYAMWNEPRPESSLLDVKLASKFVNNYEKQHLYREIASAAESGWDFSTRWMRDPTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEQFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHTWDARNQNQNVYASNFIPLWIESFYSDKKQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSGLKEARALAEDIAARWLRTNYVAYKHTGYMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCYLTY 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1817593 1821053 - CmPI595203_01g001830.1 Cmu01g0183 405689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0183 604 Pfam Trehalase 73 591 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 SUPERFAMILY Six-hairpin glycosidases 70 593 IPR008928 GO:0005975(InterPro)
Cmu01g0183 604 Gene3D - 61 600 IPR012341 GO:0005975(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 574 587 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 306 323 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 416 432 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 373 390 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 494 510 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 341 358 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 ProSitePatterns Trehalase signature 2. 501 510 IPR018232 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PANTHER TREHALASE 58 600 IPR001661 GO:0004555(InterPro)|GO:0004555(PANTHER)|GO:0005991(InterPro)|GO:0005993(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0182 Cmu-Chr1:1812243 Cmu01g0183 Cmu-Chr1:1817593 2.50E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0183 K01194 - csv:101208719 1125.15