Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0183 ATGGCTTTCTTTCCACCCCATCTTCCTCCCATTCCCTTTTCTTCATTAACCCTCTTCCATTTCTTCCTAATCATGCCATTGCTCCCTCCCGCCGCCACGTCGTTGCCGGAAGTCTTCTCCCCCCCCCTCGCCGATAAGGGCCCTGTCATTCCGGTCACCAATCTCGTCAAGTTCCTTGAGCGTCTTCAAGTTGTGGCCCTCAACTCCTTCGGTAAATTGGATTTCGATCTTAAATACTACGTCGATTTGTCTCTGAAATTCGATTTGAATTCTACCCAAACCGCTTTCGATGCCCTTGAACGATCCTCCAATGGCTCTGTCTCCGTCGAGAATTTGAAGGCCTTCATTACTGACTATTTCGATAGTGCTGGAGCCGACTTGGTTTACTCTGAGCCGGTTGATTTTGTCCCTCAGCCTGTTGGTTTCTTGCCTAAAGTTGAGAATGTGGAGGTTAGAGCTTGGGCTTTGGATATTCATAATTTCTGGAAGAATCTTAGCCGTAGAGTCTCCGATGATCTCATTCATCGGCCGGATACCCACACTCTGCTGCCGTTGCCGGAGCCCGTTGTCGTTCCAGGAGCCAGATTCCGGGAAGTTTACTATTGGGATTCCTATTGGATTATCAGAGGTTTGCTAGCTAGTAAAATGTATGATACTGCAAAGGGAATTGTTATTAATCTCATTTCAATGATTGATGAGTTTGGCCATGTTCTGAATGGTGCCAGATCTTACTACACCAACAGAAGTCAGCCTCCCCTTTTGAGTTCAATGGTTTATGATATATACCTTAGGACAGGGGATTTAGAGTTTGTGAGCAATGCACTCCCAGCCTTAATTAAAGAGCATAAGTTTTGGAATTCAGGACTCCATTCCATTACTGTCCGGGATGCTCCTGGTGGAAATGGAAATCACTCTTTATCTAGATACTATGCAATGTGGAACGAGCCGAGGCCAGAATCGTCACTGCTGGATGTGAAACTTGCCTCAAAGTTTGTTAATAACTATGAGAAACAACATCTATACCGGGAAATTGCATCGGCAGCTGAATCCGGTTGGGATTTCAGTACAAGATGGATGAGGGATCCAACAGACTTATCAACATTGGCTACCACTTCAATCCTGCCAGTTGATCTTAATGTATTCATACTCAAGATGGAACTGGACATTTCCAATTTGGCAAGAGCTGTTGGAGATTACTGCACGGCAGAACAATTCTTTGAGGCTTCTCTAGTCAGAAAGAAGACAATCAACTCTATTTTCTGGAATTCAGAGAAGGGACAATGGCTTGATTACTGGCTTGATAATGGCTCATACAAGGGTGCTCATACATGGGATGCTCGAAACCAGAACCAAAACGTATATGCTTCGAACTTCATTCCGTTGTGGATCGAATCATTCTACTCCGATAAGAAACAAATGAAGAAAGTCTTGAAAAGTTTACGAAACTCAGGATTATTGTGCAATGCTGGGATTGCAACTTCAATGATTAATTCAGGAGAACAATGGGATTTCCCAAATGGTTGGGCGCCAATCCAACACATGATCGTCGAGGGACTGGCAAGGTCTGGATTGAAGGAAGCAAGGGCATTGGCCGAGGACATTGCTGCGAGATGGCTTCGAACCAACTATGTAGCTTACAAGCACACAGGATATATGCATGAGAAATATGATGTCCAAAAGTGTGGAGACTTTGGTGGTGGAGGTGAATATGTCCCTCAGACTGGTTTTGGATGGTCAAATGGAGTTGTTTTGGCATTCCTCGAAGAGTTTGGATGGCCGGAAGATCAAAAGATAGACTGCTACTTAACTTATTAA 1815 44.41 MAFFPPHLPPIPFSSLTLFHFFLIMPLLPPAATSLPEVFSPPLADKGPVIPVTNLVKFLERLQVVALNSFGKLDFDLKYYVDLSLKFDLNSTQTAFDALERSSNGSVSVENLKAFITDYFDSAGADLVYSEPVDFVPQPVGFLPKVENVEVRAWALDIHNFWKNLSRRVSDDLIHRPDTHTLLPLPEPVVVPGARFREVYYWDSYWIIRGLLASKMYDTAKGIVINLISMIDEFGHVLNGARSYYTNRSQPPLLSSMVYDIYLRTGDLEFVSNALPALIKEHKFWNSGLHSITVRDAPGGNGNHSLSRYYAMWNEPRPESSLLDVKLASKFVNNYEKQHLYREIASAAESGWDFSTRWMRDPTDLSTLATTSILPVDLNVFILKMELDISNLARAVGDYCTAEQFFEASLVRKKTINSIFWNSEKGQWLDYWLDNGSYKGAHTWDARNQNQNVYASNFIPLWIESFYSDKKQMKKVLKSLRNSGLLCNAGIATSMINSGEQWDFPNGWAPIQHMIVEGLARSGLKEARALAEDIAARWLRTNYVAYKHTGYMHEKYDVQKCGDFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPEDQKIDCYLTY 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1817593 1821053 - CmPI595203_01g001830.1 Cmu01g0183 405689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0183 604 Pfam Trehalase 73 591 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 SUPERFAMILY Six-hairpin glycosidases 70 593 IPR008928 GO:0005975(InterPro)
Cmu01g0183 604 Gene3D - 61 600 IPR012341 GO:0005975(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 234 252 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 574 587 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 306 323 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 416 432 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 373 390 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 494 510 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PRINTS Glycosyl hydrolase family 37 signature 341 358 IPR001661 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 ProSitePatterns Trehalase signature 2. 501 510 IPR018232 GO:0004555(InterPro)|GO:0005991(InterPro)
Cmu01g0183 604 PANTHER TREHALASE 58 600 IPR001661 GO:0004555(InterPro)|GO:0004555(PANTHER)|GO:0005991(InterPro)|GO:0005993(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0183 K01194 - - csv:101208719 1125.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0182 Cmu-Chr1:1812243 Cmu01g0183 Cmu-Chr1:1817593 2.50E-92 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0183 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 58.3 4.5e-196 681.4
Cmu07g0305 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1322.8
Cmu01g2336 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.6
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Cmu06g1737 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Cmu11g1723 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.9e-249 858.2
Cmu03g1320 . 91 699 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.9e-242 833.2
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Cmu10g0990 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cmu01g2336 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.8
Cmu07g0305 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 60.0 2.1e-313 1071.6
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Cmu10g0990 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cmu01g2336 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 5.3e-312 1067.0
Cmu07g0305 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.7 3.5e-308 1054.3
Cmu10g0990 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cmu01g2336 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.6
Cmu07g0305 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1125.9
Cmu05g2572 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cmu06g1737 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cmu06g1737 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cmu01g2336 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 4.1e-290 994.2
Cmu07g0305 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 1.4e-285 979.2
Cmu10g0990 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.8e-285 976.9
Cmu11g1723 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Cmu03g1320 . 62 935 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Cmu05g2572 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.9e-308 1053.1
Cmu06g1737 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cmu01g2336 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 3.3e-298 1021.1
Cmu07g0305 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.1 6.7e-291 996.9
Cmu10g0990 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cmu01g2336 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.4
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Cmu07g0305 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1125.5
Cmu06g1737 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cmu11g1723 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 2.0e-305 1045.0
Cmu03g1320 . 95 929 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Cmu11g1723 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Cmu03g1320 . 62 935 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Cmu11g1723 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.9e-249 858.2
Cmu03g1320 . 91 699 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.9e-242 833.2
Cmu11g1723 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 4.1e-194 675.2
Cmu03g1320 . 96 614 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Cmu11g1723 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 2.0e-305 1045.0
Cmu03g1320 . 95 929 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Cmu10g0990 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cmu01g2336 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.4
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Cmu07g0305 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1125.5
Cmu06g1737 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cmu10g0990 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cmu01g2336 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.6
Cmu07g0305 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1125.9
Cmu05g2572 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cmu06g1737 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cmu07g0305 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1322.8
Cmu01g2336 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.6
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Cmu06g1737 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cmu06g1737 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cmu01g2336 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 4.1e-290 994.2
Cmu07g0305 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 1.4e-285 979.2
Cmu10g0990 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.8e-285 976.9
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Cmu10g0990 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cmu01g2336 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.8
Cmu07g0305 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 60.0 2.1e-313 1071.6
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Cmu10g0990 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cmu01g2336 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 5.3e-312 1067.0
Cmu07g0305 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.7 3.5e-308 1054.3
Cmu05g2572 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.9e-308 1053.1
Cmu06g1737 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cmu01g2336 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 3.3e-298 1021.1
Cmu07g0305 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.1 6.7e-291 996.9
Cmu01g0183 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 58.3 4.5e-196 681.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006557 1 3 1 1 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 1 38