Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0200 ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTACGGATTTCCGTCACCGACGGTGACGCTACAGATTCCTCCAGCGATGATGAGTCCGAAATGTTTGGTCGACACAGAGTTAAGAAATTTGTGAATGAAATTACGATCGAACCGTCTTGTTCTGGCGAAGGCAACGGAACCTGGGGTCTGAATAGATCGGCGAGGACTGGACTGAGACGCTCCACCGGGAAATGTGGGGTTTCGTCGAGGAATCGTCGGTCGGCGAAGGTCACTCCTGGGAAGAAGTTCCGTGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTATGACAACGCAGCCATTCAACTTCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCCAAATCGTTCGCCGGAAAATGCTCTGGCTATAACTCTGGCGAGGAATCGAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAAATCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGATACCTTTATTCCCGACGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTCCAAAATCAAACCAACTTCTTCAGCAACGACAGTTTTTTCAACGGCGTGCTCCACAGTCCGGTCGAAGAAATCGGATTCGGGTTCGAATACCCTCCACCTCCCGATGATTTCTTTCATGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA 960 51.88 MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGEGNGTWGLNRSARTGLRRSTGKCGVSSRNRRSAKVTPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQIPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDSFFNGVLHSPVEEIGFGFEYPPPPDDFFHDFSDVFGSDPLVAL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1951698 1952657 - CmPI595203_01g002000.1 Cmu01g0200 405706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0200 319 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 MobiDBLite consensus disorder prediction 93 108 - -
Cmu01g0200 319 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677(InterPro)
Cmu01g0200 319 MobiDBLite consensus disorder prediction 93 117 - -
Cmu01g0200 319 CDD AP2 115 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 SMART rav1_2 116 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 Pfam AP2 domain 116 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0200 319 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Cmu01g0200 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 225 IPR050913 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0063 Cmu-Chr1:518903 Cmu01g0200 Cmu-Chr1:1951698 3.20E-37 dispersed
Cmu01g0200 Cmu-Chr1:1951698 Cmu05g0125 Cmu-Chr5:1141214 8.60E-34 dispersed
Cmu01g0200 Cmu-Chr1:1951698 Cmu05g0972 Cmu-Chr5:8870491 2.30E-50 wgd
Cmu01g0200 Cmu-Chr1:1951698 Cmu07g1468 Cmu-Chr7:29825586 3.60E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5440 PF00847 AP2 1.20E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0200 - - - 0.0