Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0201 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTGTGGTTCTGGGGTTGGTTTTTTCGCCAATTAATGGCGACCCAGTTGAAGACAAGCGAGCTCTGCTTGATTTTGTCAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACTCTTAGCCGGCTATCGGCACTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGATTTCCCTTTGGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACATTCGCTTTCTAATCTGACAGCACTCACAGGTTTGAATCTGGCAAACAACTCTCTTTCAGGAGAAATACCTGACCTCCAAATCCCCAGATTGCAGGTTTTGGATTTGTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAAGTCTGTATTTGTAGGCAATGACATATATTTTGGAAGTTCTTTATTAAACAATCCTCCCGTACCCGCGCCATTGCCTGTGTCGAATGAAAAGCCAAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGTGGAATGTCGCCTGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCATTTGACTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCTGGGAAACGCGATTTTGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGTTGAATTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACTCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAATGGTGGGAAACTCGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACTATAACAAGCTCACTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGGAAGGCGACACAAGCTTCAGATGTTTTCAGCTTCGGTGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTTCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTAGCCAGGATACCTGACCAGAGACCCAAAATGGCGGAAATTGTGAAGATGATCGAAAGTGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTTGATGCCGCCGCAAGCTGTTGAGACAGAAAATTCAACCCCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGTTTCAACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCACTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAAGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCACTGCTAACGGACCCGAATCCTGATGATCCTTTGGTGCCAGAGATTGCACACATGTATAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG 2391 45.34 MEALWIFSFVVVLGLVFSPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPHSLSNLTALTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSVPKSLQRFPKSVFVGNDIYFGSSLLNNPPVPAPLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESLMPPQAVETENSTPQQNNKHAGGSQEFQLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1971034 1983278 - CmPI595203_01g002010.1 Cmu01g0201 405707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0201 796 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cmu01g0201 796 Pfam Ubiquitin-conjugating enzyme 653 789 IPR000608 -
Cmu01g0201 796 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 722 737 IPR023313 -
Cmu01g0201 796 SUPERFAMILY L domain-like 37 208 - -
Cmu01g0201 796 MobiDBLite consensus disorder prediction 602 636 - -
Cmu01g0201 796 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cmu01g0201 796 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 649 795 IPR000608 -
Cmu01g0201 796 CDD UBCc 651 790 IPR000608 -
Cmu01g0201 796 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Cmu01g0201 796 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cmu01g0201 796 MobiDBLite consensus disorder prediction 599 636 - -
Cmu01g0201 796 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Cmu01g0201 796 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Cmu01g0201 796 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cmu01g0201 796 PANTHER OS05G0588300 PROTEIN 8 610 IPR050994 -
Cmu01g0201 796 Gene3D Ubiquitin Conjugating Enzyme 646 796 IPR016135 -
Cmu01g0201 796 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
Cmu01g0201 796 SUPERFAMILY UBC-like 644 795 IPR016135 -
Cmu01g0201 796 FunFam pollen receptor-like kinase 1 295 400 - -
Cmu01g0201 796 SMART ubc_7 652 795 - -
Cmu01g0201 796 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0201 796 Gene3D Ribonuclease Inhibitor 25 226 IPR032675 -
Cmu01g0201 796 FunFam Ubiquitin-conjugating enzyme 28, E2 649 796 - -
Cmu01g0201 796 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g0201 796 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
Cmu01g0201 796 FunFam Probable inactive receptor kinase RLK902 24 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0064 Cmu-Chr1:528146 Cmu01g0201 Cmu-Chr1:1971034 1.70E-84 dispersed
Cmu01g0066 Cmu-Chr1:538418 Cmu01g0201 Cmu-Chr1:1971034 1.10E-152 dispersed
Cmu01g0201 Cmu-Chr1:1971034 Cmu02g1894 Cmu-Chr2:32858409 9.10E-133 dispersed
Cmu04g0541 Cmu-Chr4:18725513 Cmu01g0201 Cmu-Chr1:1971034 5.70E-23 dispersed
Cmu05g2507 Cmu-Chr5:33931035 Cmu01g0201 Cmu-Chr1:1971034 6.20E-34 dispersed
Cmu06g0783 Cmu-Chr6:9576324 Cmu01g0201 Cmu-Chr1:1971034 2.50E-28 dispersed
Cmu07g0877 Cmu-Chr7:22100909 Cmu01g0201 Cmu-Chr1:1971034 2.80E-17 dispersed
Cmu11g1388 Cmu-Chr11:26049690 Cmu01g0201 Cmu-Chr1:1971034 2.30E-48 dispersed
Cmu02g2380 Cmu-Chr2:37278187 Cmu01g0201 Cmu-Chr1:1971034 1.00E-47 transposed
Cmu04g0675 Cmu-Chr4:20856366 Cmu01g0201 Cmu-Chr1:1971034 3.00E-199 transposed
Cmu06g1862 Cmu-Chr6:29429762 Cmu01g0201 Cmu-Chr1:1971034 4.90E-32 transposed
Cmu07g0621 Cmu-Chr7:8713310 Cmu01g0201 Cmu-Chr1:1971034 6.00E-49 transposed
Cmu07g1020 Cmu-Chr7:24937502 Cmu01g0201 Cmu-Chr1:1971034 2.30E-37 transposed
Cmu09g1000 Cmu-Chr9:10086848 Cmu01g0201 Cmu-Chr1:1971034 8.60E-71 transposed
Cmu01g0201 Cmu-Chr1:1971034 Cmu05g0970 Cmu-Chr5:8840476 1.50E-167 wgd
Cmu01g0201 Cmu-Chr1:1971034 Cmu07g1456 Cmu-Chr7:29686262 1.50E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75181 PF07714 PK_Tyr_Ser-Thr 2.30E-34 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0201 - - - 0.0