Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0223 ATGAGATTTTGCTTTATCGGAGGAGAGTATAAAATTGTTAACGCCCACTTCTCTGCTTCTTTCTTCTTCTTCTTCTTTCCCGCCGTAGATTTCGAACGATCAAAATATTTTCAGAGCATTTCGATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCTTTCTATGAATGTGAATTTGCTCGAGTTGTTCTTGAGTTGAGTGATAAAAATCTCTTCTATGCTGCAAATAGTGATGTTCTTGGTTTCTCTGATTTCTTGAGTGCTTTACTGTTTGCTTTCAGGGAAGATGATTCCTGCAATCTATCATCCATCCAACCCACAGTAGGACTCGTCCAGTTCCCCCACCAGATCAGGGCTACAAAAAGAACGCAAAAGCTTCAAAATTCTAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGCGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAACTGCTTCAGCTATAAAGATACCCCAGATTTTACTGTTACCGTGCCAAAGAAGTTGTCATACTGCGGTGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTATGGAAGTGGAACTTTGCTCCCCTGTTGGAACCAATGAATCAGACGGTGTTTTTGTTTTAATTCTCACTCTGTCTAGGTATTGTAATCTTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA 2112 44.7 MRFCFIGGEYKIVNAHFSASFFFFFFPAVDFERSKYFQSISMGSMLGDCRHMTLTTSANSDPLILQLLPFYECEFARVVLELSDKNLFYAANSDVLGFSDFLSALLFAFREDDSCNLSSIQPTVGLVQFPHQIRATKRTQKLQNSSRMEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQKAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAASILMGSMLGDLPSYDPHNFSQLRPSDPSTPSMEVELCSPVGTNESDGVFVLILTLSRYCNLKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2209034 2218375 + CmPI595203_01g002230.1 Cmu01g0223 405729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0223 703 SUPERFAMILY DNA topoisomerase IV, alpha subunit 242 528 IPR036078 GO:0003677(InterPro)|GO:0005694(InterPro)
Cmu01g0223 703 CDD TOPRIM_TopoIIB_SPO 369 526 IPR034136 -
Cmu01g0223 703 MobiDBLite consensus disorder prediction 669 690 - -
Cmu01g0223 703 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 173 542 IPR002815 GO:0000228(PANTHER)|GO:0000706(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003918(InterPro)|GO:0005694(InterPro)|GO:0007131(PANTHER)|GO:0042138(PANTHER)
Cmu01g0223 703 Pfam Det1 complexing ubiquitin ligase 634 673 IPR018276 -
Cmu01g0223 703 Pfam Det1 complexing ubiquitin ligase 578 603 IPR018276 -
Cmu01g0223 703 FunFam Meiotic recombination protein SPO11-2 167 311 - -
Cmu01g0223 703 Pfam Type IIB DNA topoisomerase 244 308 IPR013049 GO:0003677(InterPro)|GO:0003824(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006259(InterPro)
Cmu01g0223 703 Gene3D - 165 311 IPR036388 -
Cmu01g0223 703 PRINTS DNA topoisomerase VI subunit A family signature 285 302 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cmu01g0223 703 PRINTS DNA topoisomerase VI subunit A family signature 371 388 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cmu01g0223 703 PRINTS DNA topoisomerase VI subunit A family signature 395 416 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cmu01g0223 703 PRINTS DNA topoisomerase VI subunit A family signature 303 318 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cmu01g0223 703 PRINTS DNA topoisomerase VI subunit A family signature 428 444 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Cmu01g0223 703 Gene3D - 313 535 - -
Cmu01g0223 703 MobiDBLite consensus disorder prediction 669 703 - -
Cmu01g0223 703 Pfam Topoisomerase 6 subunit A/Spo11, Toprim domain 370 529 IPR034136 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0223 K10878 - - csv:101213596 670.618
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39