Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0234 ATGGCTGGAGAGCTTTGTGAAGGAGGAGAAAAATCAAACGAGATGGTAGTTGGAGGAGGGTTTTTTTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAACCAGATCCAAACCGGGTTCGGTTCCACCACCGAACACGCGACGGAGATGTTCAATGAGTCGAGTGGTGGCGGTGGTGGTGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACGACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCATTCGAAGCGGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATCGACGGTCATCGATCAATCGTGGCACGACTCGAGGATCAGAAACCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACGATGAAAACCTTGCAAAACCACCACCTCCACGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACGGTAGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAATAACAACAACAACAATCAACATTTGAACAACGGCAATGGTGGGGGCGTGTCGTTGACATTAGGGTTACAGCAGCACGCAGCAGCTGGGGGGAATGGCAACGGAGGGGTGAGCATCGCCTTCTCTCCGGCAGCAGCGGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1800 46.22 MAGELCEGGEKSNEMVVGGGFFYNSNSNSNNIPNQFTNQIQTGFGSTTEHATEMFNESSGGGGGDDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVARLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNNNNQHLNNGNGGGVSLTLGLQQHAAAGGNGNGGVSIAFSPAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2316473 2319545 - CmPI595203_01g002340.1 Cmu01g0234 405740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0234 599 SMART HOX_1 311 375 IPR001356 GO:0003677(InterPro)
Cmu01g0234 599 Coils Coil 378 398 - -
Cmu01g0234 599 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 94 399 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g0234 599 CDD homeodomain 311 372 IPR001356 GO:0003677(InterPro)
Cmu01g0234 599 MobiDBLite consensus disorder prediction 497 521 - -
Cmu01g0234 599 FunFam BEL1-like homeodomain protein 4 314 376 - -
Cmu01g0234 599 SMART prehox3 136 260 IPR006563 -
Cmu01g0234 599 Pfam Associated with HOX 142 258 IPR006563 -
Cmu01g0234 599 SUPERFAMILY Homeodomain-like 312 377 IPR009057 -
Cmu01g0234 599 ProSiteProfiles 'Homeobox' domain profile. 308 371 IPR001356 GO:0003677(InterPro)
Cmu01g0234 599 Gene3D - 314 376 - -
Cmu01g0234 599 Pfam Homeobox KN domain 328 367 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0234 Cmu-Chr1:2316473 Cmu02g1296 Cmu-Chr2:26246206 8.20E-78 dispersed
Cmu01g0234 Cmu-Chr1:2316473 Cmu10g2559 Cmu-Chr10:32387093 2.00E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5442 PF07526 POX 6.00E-41 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0234 - - - 0.0