Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0237 ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGCCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCCGTCATCAAGTTTTCCGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG 534 55.62 MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFADLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2372783 2373316 + CmPI595203_01g002370.1 Cmu01g0237 405743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0237 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 141 - -
Cmu01g0237 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 137 IPR013083 -
Cmu01g0237 177 Pfam Ring finger domain 90 134 IPR001841 -
Cmu01g0237 177 ProSiteProfiles Zinc finger RING-type profile. 91 134 IPR001841 -
Cmu01g0237 177 SMART ring_2 91 133 IPR001841 -
Cmu01g0237 177 SUPERFAMILY RING/U-box 72 140 - -
Cmu01g0237 177 SMART ringv_2 90 134 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0237 Cmu-Chr1:2372783 Cmu01g1973 Cmu-Chr1:33006423 5.10E-12 dispersed
Cmu01g0237 Cmu-Chr1:2372783 Cmu05g0159 Cmu-Chr5:1388085 1.30E-34 wgd
Cmu01g0237 Cmu-Chr1:2372783 Cmu06g0341 Cmu-Chr6:3996013 8.10E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0237 K16281 - csv:101215533 300.056