Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0239 ATGGAAGGAACGACCGAAGTTCGTCGACTAAGAAGAAAGGAACTGCTGTGCTTTCTTCGTCTCGATTGCTTGATGAGATCCAAGCCGGTTCCTGAACCGGAGGATTACAAGAAAGCTTTTGAAGAAGATGATGTCTACCATCTTGACGATCTTGACGACGATGATCGCAATGGTGATAAAGAAGGAGGCAAGAGAGATTTCAGCAAATTGGAGTTGAAACCTGACCATGCTAATCGGCCCTTATGGGCTTGTGCTGATGGTCGGATATTCCTCGAAACTTTCTCACCATTGTACAAACAGGCATATGATTTCCTTATTGCAATCGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTACAACCTCACTCCACATTCTTTGTATGCTGCGGTGTCTGTTGGTTTGGAGACAGAAACAATTATCGCAGTTCTGAGTAAGCTGTCTAAGGCCAAACTTCCCAAGGAGATGATTGATTTCATTTATGCTTCTACTGCCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAATTGCTGAAGGATGAGGTTATAGGCAGAGCCAGAATTAGTCCTGAGGATTCTCGTGGAAATGGTGAGTTTACAATTAGTAAAACAGCGGGTGAACTTGGCAGTCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCTGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCATCACAAGTTGAAAATGTTAAACAGCGCTGCCTGCCCAATGCCTTAAATTATCCCATGTTGGAAGAGTATGACTTCAGAAATGACACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAGCCTAGGCCATATCAGGAAAAGAGTCTTAGCAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTCGGCGTTTCTGCAGCCAGTCGTATCCGGAAAAGTTGTCTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGCTCTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACGTCAGATAGTAAAGAAAGATTTCGAGGAAATGCGGGGGTGGTTGTTACAACCTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATCTAAATTTTCTTATTGGTCCCAAGTTGTATGAAGCCAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAGAACTCAAAGAAAAAGCAGGCTCTTTATGTAATGAACCCTAATAAGTTCAGGGCGTGTGAGTTTCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTCGCTGACAATCTTTTTGCGCTTACGGAGTATGCGATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTCCTTTCAAAGGTGGGTGATAACTCTATTGATATTCCTGAGGCAAATGTGATTATTCAGATATCATCACATGCGGGTTCAAGACGTCAAGAAGCCCAACGTCTGGGTCGTATTCTTAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGCAAAGAGGAGTATAATGCCTTTTTCTATTCACTTGTTTCTACTGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCAGCAGATGCAGGAGCTGATTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGCGATGATATGGTAGGATTGGAGCAGTTAGAAGATGATGCAGACCAAATTGCACTCGATAAGGCTCGACGTTCAATGGGATCCATGAGTGCAATGTCGGGAGCAAATGGCATGGTTTACATGGAGTATAGCACTGGACGGAAACTCGCGGGTCAAGGGCAGCTTAAGAGCAAGCCAAAAGACCCGGCGAAGAGACATCATTTGTTCAAAAAACGTCATGTCCTCAAAAAACATCGGCCAGCACAGAGGTATATAGTCCGTTGTCAATTGAGCATAGATCAACTGGTTGAAGCACATACCAAAAGGTGA 2439 43.13 MEGTTEVRRLRRKELLCFLRLDCLMRSKPVPEPEDYKKAFEEDDVYHLDDLDDDDRNGDKEGGKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTANYGKVKLVLKKNRYLVESPFPEVLQKLLKDEVIGRARISPEDSRGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSMGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRHVLKKHRPAQRYIVRCQLSIDQLVEAHTKR 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2402263 2412589 - CmPI595203_01g002390.1 Cmu01g0239 405745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0239 812 FunFam Putative DNA repair helicase rad25 479 721 - -
Cmu01g0239 812 Pfam ERCC3/RAD25/XPB C-terminal helicase 478 724 IPR032438 -
Cmu01g0239 812 Pfam Type III restriction enzyme, res subunit 296 453 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Cmu01g0239 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 472 IPR027417 -
Cmu01g0239 812 Gene3D - 479 719 IPR027417 -
Cmu01g0239 812 NCBIfam DNA repair helicase rad25 66 781 IPR001161 GO:0003678(InterPro)|GO:0006289(InterPro)|GO:0006367(InterPro)
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 606 631 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 416 436 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 165 184 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 79 99 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 278 304 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 587 605 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 643 666 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 309 331 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 540 562 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 482 504 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 734 753 - -
Cmu01g0239 812 PRINTS Xeroderma pigmentosum group B protein signature 520 535 - -
Cmu01g0239 812 SMART helicmild6 553 631 IPR001650 -
Cmu01g0239 812 CDD DEXHc_XPB 289 458 - -
Cmu01g0239 812 Gene3D - 287 478 IPR027417 -
Cmu01g0239 812 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 691 IPR001650 -
Cmu01g0239 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 721 IPR027417 -
Cmu01g0239 812 CDD SF2_C_XPB 489 653 - -
Cmu01g0239 812 FunFam Probable DNA repair helicase RAD25 287 478 - -
Cmu01g0239 812 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 470 IPR014001 -
Cmu01g0239 812 SMART ultradead3 293 474 IPR014001 -
Cmu01g0239 812 Pfam Helicase conserved C-terminal domain 81 203 IPR032830 -
Cmu01g0239 812 PANTHER RAD25/XP-B DNA REPAIR HELICASE 61 753 IPR050615 GO:0000112(PANTHER)|GO:0005675(PANTHER)|GO:0006367(PANTHER)|GO:0043138(PANTHER)|GO:0097550(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0239 K10843 - - csv:101215293 1406.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30