Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0252 ATGGGAACAAAGCATATGCAATCTAATTCTAGCATGGTTGGAAGAGTCTCAAAAAGCCACAAAATGCTGTGCAAAGCTGTTGATAGACCTAGCAAAGAACTTCAACAGCCATCTCCTAGAAGTTTGGTGACTGCATCATCAAAGAATCTAGATTCAACAGCATCAACAAGAGTAGCTTGCTGCAGAAGTCGAAGATTTTGTACTTGTAAAAGTTGTATGGAGTATGGCCGACATAATGAGATTAGCCTAAGATTGGTTCAGAAGAATGAAGCGGCTGAGCCATTTTCAAGTAAAAAGTTTGTTGGTGTGGCTGATAAACAGTGTAAACAATTATTAGATGCATTGGGAATTTTCAATTCAAATAAGGAATTGTTTGTAAATCTACTACAAGACCCAAATTCTCTGTTAATTAAACGTATTGAAGACTCTACTGATTCAAGGAACAGAAAACAGCAGATGATGACTTTCTTTGATAGTAGGTTGTCTGGAAACAAGATAAGAGAAGTGGGGGAATATGAGGAGCCTGACTACAGTAAAAAATTGAAGCCTTGTGATAGATTACCCACTGAGGATAGCGATGATTCTCTATCCTTGGAAAGAATAGTGGTATTAAAGCCAAATCCAACTGTCTCACTACCTGCGGCTGTGGGAACCAATCATTGCCCCTCTCTGAAATCTCATTCTAGTTTCATAAAGAATGGGCAAAGTGACAAGAGAACTCTTTTTTCTTTTAGACAAATAAAGAGGAAGATGAAGCAAGCAATGAGGATAGGGAAAAAAGAACCCGAATGCCTATCAACTAATGGTATCGCCAAGAAAACTCCACCAGTTTTTAGGGCCCCAAAAGATGATGGTAAACAGATGGTTATGGAGGCAACTGGAAGAAGTTCCTACAATAATATTCAAACAGATGATAAAATAATTCCTAGTTCATTTCAAGATTCCCTGGAAAGGGATCAACAAGACAGCGCATTTTACTCTAGAAATGGGGACAAGACGGCTTCAACCAGTGAAAGTACTGACAAAAAGGTAGGCCAGTCAGCTGTGACAAGTAATCTCAAACGGCAGAAATCTAAGAAGCATGAAGGGGACAAAGAGGTCTCAAGAAAAATTAAAGCAAAACCATGGGGGTGGGCGATGTGCTTTTCTGATGATGACATATTGCCATCAAATAAACCTGGATGTCATACTCCAAGCCATACGAGATATTCCCACCTTAGCAATAAGAAGTTCATTTACGAGAAGAAGTCAAAATCTCAGAATGACGTGGAACAAAGTTGCAAAACACCAGAAATGGTTAAAATAGGAGCTCCTTTTGCAGAGGCAAGGAGAGATGATGACCAATTGCACGCCTCAACTACAGAGTTGAATGTGTCACCCGTCATTTTTTCTGATGTCAAAGTGGATCAAGATCCAATTATTGAAGGGTCTGTGAAGTTCGTAAACGACATTGCCACAATACACCAGGAAAGAAATAGTTTTTGTGAAGAGTCATCTAGATTTGATAACAATTGCAACACATGTTATTGTCAAAGAACCAACAAGACCAAGGGCTTTGAAGAGAAAGGAAATCCAGAGCTCTCTAAACTGAATTTGCCTTTGGAGGTTCAACCATCAGCTCTTTCAGTAGATCCATTTCCATCCAGCTCATTACAATTTCAGACAGTGGAAGATCCTAATGGTTTGTGTGATAGAGAAGTGCAGCCTCTACCAGAAACTATTCATGACGACCAACTTTTGATAGATGCTACCTCTAGTAATCTTGCTTTCACCCCAGGAACAGCTGAGCCATCTAGTGAAGCACTCCCCATTAATTTTGAAAAGGACCAGTGTACTGGTTTGGCAAGGTTGCAAGAGGTTCTCAATCCCGCCATCGCTTCCTTTAACTGTTGTAGCTCCATCTCTCAGTGTGTACTTGAGCTGCTGCAAGTCTCAAAACAGAATTGGAATGAATTGTCATTGGATTGTCATTCTTCAACTTGGCTGCAGATATCATTTGTTGACAAAGTGAAGATATTTAGTAGCCAGTTATGTGGTGATTGTGTGCTTCTTTTCGACTATTTTAATGAAGTCCTTGAGGATGTTTTCCACTGTTATATTAGATGCTCCCCATGGTTATCATCTTATAAGGCACACATTCAAGCACCTGATAAGGAAAGCGCTTTCTATCACGAGGTTATCCAACATGTGGATTGGTCACTTCTGCAGCAGCAGCCACCACAAACACTGGACCAACTTTGTTTAAGAGACTTGAGATCTAGAAAGTGGATCAATTATCCAACTGAAACTGAAGAGCTCGTTACCATTGTAGCGGAATCGGTTTTAAGAGAATTAATCATTGAAAGTGTTGTTTACCTTGGTGTAGATGCTCTCACACAACTCCAAATGTTGTCTGAAGATGAACAGTTGGAACTCAACACACAGCTGAAACAACTCAACAAACCTGCAATCAAGAGCTTCAAGACAGAATTTGGTGATATTATAGATTGTGTTGACATCTACAAACAACCTTCTCTTGATCATCCTTTGCTCAAAAACCATGCAATCCAGATGAAGCCAACAACAATCCCGAAAGGGCTGATAGGCGATACATCAAAAGTCGAGAGGCTGCTGCAGGATCTTCCAAACATTAACAGCTGCCCACCAGGATCAGTGCCAATCAGAAGGACTACAAGGGAAGATCTGATAGCAGCAAGAAGTTTCAAGCCTTTGTGGTCAGATCAAGCAACAGATAATCTCCGGCCAAGCACTACGATCGACGCCGCCGGTTATCAGCTTGCAACACTCAACTATAGGGCCAAAGTCTATGGAGCAAAATCACAAATCAATGTATGGAACCCAATTCCATCAGTGGATCAATATAGTTCTGCTAGTATGTGGCTATCTCAAGGCTTTAGAGATCAACAGAACACCATACAAGTTGGTTGGGGAGTCCAACCAAAAGTCTTTCAGAATGTTACCCGATTGAGCACCTATTGGACAGCTGATGGTTACCAAAACACTGGATGCTACGACCAACTATGTCGAGGTTTCATACAAATCGATTCGAGGATCACACCCGGCATGCCTATAAGACCAATTTCTACCTACAACGGACCCCAATACGGAATTCCAGTCAGCATTCACCAGGATGCGAGCACGGGGAACTGGTTGTTCATGCTTGGAGACAAATACATTGGGTACTGGCCAAAGGGACTGCTGCCAGGCTTGGAAAATGGAGCAACTACTGCAGCATGGGGAGGGGAAATTTACAGCCCTACAACAGAAGCAGGGCCAGCCATGGGGAGTAGCCATTTTCCTGAAGAGGGTTTCAGTAAAAGTGCTTTTGTGAATCAGATTCAAGTGGCAGAGTCTAGTATTTCAAGGGGATTTGTTGATCCAGTGGGTTCACAGCTCAGTATTGTTTTGGACAAACCTATCTGTTTTGGGCTCATTAATAAGTTTACTGAAGATGGGAACTGGGGACATCATATCTTCTTTGGAGGGCCAAGTGGCTGCAGGGATGTAATCGGTTCGGTTCGCAAGAACTGTGACTGA 3537 41.67 MGTKHMQSNSSMVGRVSKSHKMLCKAVDRPSKELQQPSPRSLVTASSKNLDSTASTRVACCRSRRFCTCKSCMEYGRHNEISLRLVQKNEAAEPFSSKKFVGVADKQCKQLLDALGIFNSNKELFVNLLQDPNSLLIKRIEDSTDSRNRKQQMMTFFDSRLSGNKIREVGEYEEPDYSKKLKPCDRLPTEDSDDSLSLERIVVLKPNPTVSLPAAVGTNHCPSLKSHSSFIKNGQSDKRTLFSFRQIKRKMKQAMRIGKKEPECLSTNGIAKKTPPVFRAPKDDGKQMVMEATGRSSYNNIQTDDKIIPSSFQDSLERDQQDSAFYSRNGDKTASTSESTDKKVGQSAVTSNLKRQKSKKHEGDKEVSRKIKAKPWGWAMCFSDDDILPSNKPGCHTPSHTRYSHLSNKKFIYEKKSKSQNDVEQSCKTPEMVKIGAPFAEARRDDDQLHASTTELNVSPVIFSDVKVDQDPIIEGSVKFVNDIATIHQERNSFCEESSRFDNNCNTCYCQRTNKTKGFEEKGNPELSKLNLPLEVQPSALSVDPFPSSSLQFQTVEDPNGLCDREVQPLPETIHDDQLLIDATSSNLAFTPGTAEPSSEALPINFEKDQCTGLARLQEVLNPAIASFNCCSSISQCVLELLQVSKQNWNELSLDCHSSTWLQISFVDKVKIFSSQLCGDCVLLFDYFNEVLEDVFHCYIRCSPWLSSYKAHIQAPDKESAFYHEVIQHVDWSLLQQQPPQTLDQLCLRDLRSRKWINYPTETEELVTIVAESVLRELIIESVVYLGVDALTQLQMLSEDEQLELNTQLKQLNKPAIKSFKTEFGDIIDCVDIYKQPSLDHPLLKNHAIQMKPTTIPKGLIGDTSKVERLLQDLPNINSCPPGSVPIRRTTREDLIAARSFKPLWSDQATDNLRPSTTIDAAGYQLATLNYRAKVYGAKSQINVWNPIPSVDQYSSASMWLSQGFRDQQNTIQVGWGVQPKVFQNVTRLSTYWTADGYQNTGCYDQLCRGFIQIDSRITPGMPIRPISTYNGPQYGIPVSIHQDASTGNWLFMLGDKYIGYWPKGLLPGLENGATTAAWGGEIYSPTTEAGPAMGSSHFPEEGFSKSAFVNQIQVAESSISRGFVDPVGSQLSIVLDKPICFGLINKFTEDGNWGHHIFFGGPSGCRDVIGSVRKNCD 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2521076 2527786 + CmPI595203_01g002520.1 Cmu01g0252 405758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0252 1178 MobiDBLite consensus disorder prediction 355 369 - -
Cmu01g0252 1178 MobiDBLite consensus disorder prediction 324 353 - -
Cmu01g0252 1178 MobiDBLite consensus disorder prediction 324 369 - -
Cmu01g0252 1178 Pfam Neprosin activation peptide 819 914 IPR025521 -
Cmu01g0252 1178 Gene3D - 950 1061 - -
Cmu01g0252 1178 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 4 784 - -
Cmu01g0252 1178 MobiDBLite consensus disorder prediction 34 48 - -
Cmu01g0252 1178 Pfam Neprosin 952 1163 IPR004314 -
Cmu01g0252 1178 Pfam Protein of unknown function (DUF3741) 107 134 IPR022212 -
Cmu01g0252 1178 MobiDBLite consensus disorder prediction 28 48 - -
Cmu01g0252 1178 Pfam Domain of unknown function (DUF4378) 638 781 IPR025486 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0252 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0252 Cmu-Chr1:2521076 Cmu09g0343 Cmu-Chr9:3299278 4.00E-76 dispersed
Cmu01g0252 Cmu-Chr1:2521076 Cmu05g0173 Cmu-Chr5:1503995 4.90E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g314 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00276 Chy09g01233 . . . . . . . . . . . . . . . . . . Bhi12g00270 . . Lac11g2084 Hepe06g1539 . Lcy12g1643 Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 Lsi09g00252 . . Cme09g01768
Vvi16g695 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00257 Cam01g0264 Cec01g0255 Cco01g0270 Clacu01g0263 Cmu01g0252 Cre09g2257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007276 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 6 1 1 36