Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0266 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGAGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAACCATCACATTCAAATTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCATTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCGGGTTCGAATTCGTCAACCCCCAGACGACGACGAGGGCGGCCACCCGGTTCTGGAAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCAGCTGGACTAGCCTTTGCTCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTGTTGTCATTCGCACAGCAGAGGCCAAGGGCTCTTTGCATATTGTCTGGCAATGGGACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCCACTGGCAGTTCACTTGCAAGGAAAGCAAATATTCTTGGAGTTTCTGGTGGTGTTAGAGGATGTTTTGGTCGACCCTCCCTTGAGGGAGAAGGGCTGATTCCTGTGGTAGGTGTGCTGCTGCTGCTGCTTCTTCTTCTTCTTCTAAATGATGTTTTGTTACCATCATTTAGACTCGATCCTTTTCGATTGGAGTCCCTTCATGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTGGCTGAAGACGGTAGTCCTCGAAGTAGGACAGGAGGTATTAGTGTTTCTCTCTCTAGTCCTGATGGTCATGTCATTGGTGGCGGTGTTGCCGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTGGCTGGTTCGAAAAGCAATGATGCTTCTGGAAATGAGCACCACGACAATTTGGTTTCCCCCACGAGTGCCCCATCTGCCCAAACCTACAATCCATCTCCAATTGGTGTTTGGCCTGGTTCCCGTTCAGTCGATATTCATGCTAACATATGGTATGAGACTTCATTTCAAGTTTCTCAAGTCAATGTTGATTTTATTGGGCAGAGTTTCTGGTTTTTGGAGGGGTATCTCATTCCAATTTCCTTTTCAAGGGCTTCTGCTCGAGATGAAAAGGATTATATGGTGGTGTTGGTTAGAAACAGAACTGGAATGGAATAG 1350 47.19 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRALCILSGNGTVSSVTLRQPASTGSSLARKANILGVSGGVRGCFGRPSLEGEGLIPVVGVLLLLLLLLLLNDVLLPSFRLDPFRLESLHGHFQILCLSGSYLVAEDGSPRSRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGSKSNDASGNEHHDNLVSPTSAPSAQTYNPSPIGVWPGSRSVDIHANIWYETSFQVSQVNVDFIGQSFWFLEGYLIPISFSRASARDEKDYMVVLVRNRTGME 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2688915 2695117 + CmPI595203_01g002660.1 Cmu01g0266 405772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0266 449 MobiDBLite consensus disorder prediction 85 143 - -
Cmu01g0266 449 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 73 364 IPR039605 GO:0003680(InterPro)
Cmu01g0266 449 CDD DUF296 163 334 IPR005175 -
Cmu01g0266 449 ProSiteProfiles PPC domain profile profile. 158 358 IPR005175 -
Cmu01g0266 449 MobiDBLite consensus disorder prediction 112 133 - -
Cmu01g0266 449 SUPERFAMILY AF0104/ALDC/Ptd012-like 272 335 - -
Cmu01g0266 449 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 212 - -
Cmu01g0266 449 Gene3D - 163 246 - -
Cmu01g0266 449 Gene3D - 256 350 - -
Cmu01g0266 449 MobiDBLite consensus disorder prediction 347 376 - -
Cmu01g0266 449 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 334 IPR005175 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0266 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0266 Cmu-Chr1:2688915 Cmu08g0870 Cmu-Chr8:20983940 1.20E-41 dispersed
Cmu01g0266 Cmu-Chr1:2688915 Cmu06g0374 Cmu-Chr6:4281642 8.90E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g329 Blo02g01107 Blo03g00211 . Bda08g00520 Bpe05g00642 Bpe07g00112 . . . . Cma02g01007 Cma15g01221 Car02g00752 Car15g01102 . . Cpe05g00713 . . . . . . . . . . . . . . Cone8ag0311 Cone12ag0311 Cone6ag0774 . . Csa05g00288 Chy09g01218 . . . . . . . Bma05g00817 Bma12g00188 . Cmo02g01022 Cmo15g01287 . . . . Cpe08g00855 . Bhi12g00246 . . . . . Lcy12g1658 Cla01g00271 Cam01g0279 Cec01g0271 Cco01g0286 Clacu01g0278 Cmu01g0266 Cre09g2242 Lsi09g00265 . . Cme09g01755
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005578 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 2 1 1 2 1 1 40