Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0268 ATGATCTGTATCTCATCAATTCGCTCTCTTCTCCGAAGAAATTTCTTCAGCGTTCGATCATTATCTTCTTCACCTCTGGTTTCAAATACCCGATTCTTCCCCGATTCGAAGCAAACCCTTTTGCATAATCAGCAGTGTTTTTCTGTAACTCGTTTCGTTTCACCAATTAATTCAGGTTCTTCGCTTATCGGCTCGTTTTCGACTCGCTTGGAACATACCATGGCCACCCCTTCCAAGACTTCAGTCCATGACTTCACCGTCAAGGATGCTAGAGGAAATGATGTTGACCTCAGCATTTACAAAGGAAAGGTCCTGTTGATTGTCAACGTCGCTTCACAATGTGGCTTGACCAATTCGAATTACACTGAACTGAGTCAGCTGTATGAAAAATACAAGGGTCATGGATTTGAGATTCTTGCATTTCCGTGCAACCAATTTGGAGGCCAGGAGCCAGGAACCAATGAAGAGATTGTGCAATTTGCTTGCACCCGTTTTAAGGCTGAGTACCCCATTTTTGACAAGGTGGACGTGAATGGAAACAATGCGGCTCCTCTGTACAAGTTCTTGAAGTCAAGCAAAGGTGGGCTCTTCGGAGATGCCATTAAGTGGAACTTCTCCAAGTTCTTGGTGGACAAAGATGGAAACGTTGTCGATCGTTACGCCCCAACAACTTCCCCGCTCAGCATTGAGAAGGATGTGAAGAAGCTGCTTGGAGTTGCTTAA 723 44.81 MICISSIRSLLRRNFFSVRSLSSSPLVSNTRFFPDSKQTLLHNQQCFSVTRFVSPINSGSSLIGSFSTRLEHTMATPSKTSVHDFTVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKGHGFEILAFPCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKFLKSSKGGLFGDAIKWNFSKFLVDKDGNVVDRYAPTTSPLSIEKDVKKLLGVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2702427 2704393 - CmPI595203_01g002680.1 Cmu01g0268 405774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0268 240 PRINTS Glutathione peroxidase family signature 136 152 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cmu01g0268 240 PRINTS Glutathione peroxidase family signature 100 117 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cmu01g0268 240 PRINTS Glutathione peroxidase family signature 201 210 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cmu01g0268 240 Gene3D Glutaredoxin 73 238 - -
Cmu01g0268 240 CDD GSH_Peroxidase 81 233 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cmu01g0268 240 ProSitePatterns Glutathione peroxidases signature 2. 139 146 IPR029760 -
Cmu01g0268 240 ProSitePatterns Glutathione peroxidases active site. 102 117 IPR029759 -
Cmu01g0268 240 FunFam Glutathione peroxidase 73 239 - -
Cmu01g0268 240 ProSiteProfiles Glutathione peroxidase profile. 72 240 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cmu01g0268 240 ProSiteProfiles Thioredoxin domain profile. 76 238 IPR013766 -
Cmu01g0268 240 PANTHER GLUTATHIONE PEROXIDASE 73 237 IPR000889 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Cmu01g0268 240 Pfam Glutathione peroxidase 82 190 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Cmu01g0268 240 SUPERFAMILY Thioredoxin-like 81 237 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0268 K00432 - - csv:101220688 398.667
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0268 Cmu-Chr1:2702427 Cmu07g1535 Cmu-Chr7:30583826 7.30E-70 dispersed
Cmu01g0267 Cmu-Chr1:2695377 Cmu01g0268 Cmu-Chr1:2702427 1.70E-71 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198