Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0271 ATGGAGAATTGTACCTTGACTGGCTTGTTAAAGAAGGCGGCTTTTGAATTTCCTCGCTGCCGGGCTCTCTCTGTCTCCGGAAAATTCGACCTCACACATGAGCGGTTGCAGGAGCTCATCGAACACGCCGCCGCTCGCTTGGTGGATGCCGGAGTTAACGCCGGTGATGTGGTCGCCCTCACGTTTCCCAATACTGTTGAGTATGTGATCATGTTTTTGGCCGTAATCCGATGCCGAGCAACCGCTGCACCATTAAATCCGGCTTACACGGCGGAGGAATTCGAGTTCTACTTATCGGACTCGGAATCGAAGCTTCTTCTCACATCGAAAGAAGGAATTCCATCGGCACAAGCCGCTGCTACAAAGCTTAATATTCCTCAAGTAAAAGCGGATCTGTCCAATGGCGATGAGTTTATTGATCTCTCTCCGTCTGCAACCGAACTCAAGTCGAATGTTGCGGAGATCGTTAACGATCCGTCCGACGCCGCACTCTTCCTCCACACCTCCGGCACCACCAGCCGGCCCAAGGGCGTACCGCTGACTCAACAAAACCTCGCCGCCTCTGTTCAGAACATCAAATCGGTGTACAAGCTTTCGGAGTCTGATTCAACCGTACTCGTTCTTCCGTTGTTCCACGTTCACGGACTAATGGCGGGATTACTATCATCACTAATTGCCGGAGCCGCCGTGACTCTTCCAGCCGGCGGACGATTCTCAGCTTCGACGTTTTGGTCCGATATGATCGCCTACAACGCGACGTGGTACACGGCGGTCCCTACAATTCACCAAATCATACTCGACCGCCATTTCAGCAAGCCAGAGCCGTCGTATCCGAAGCTCCGCTTCATTCGCAGCTGTAGCGCGTCGTTAGCACCTTCGATTTTGGAACGATTGGAAAAATCATTCGGAGCTCCGGTTCTCGAGTCATACGCGATGACCGAAGCGTCGCATCTAATGGCGTCCAATCCGTTGCCGGAGGACGGCGTACACAAAGCCGGATCGGTAGGGAAGCCGATCGGTCAAGAAATGGCTATTCTGGACGAGAACGGCGTCCTGCAACCGGAAGGTGTTAAAGGAGAAGTGTGTATTAGGGGACCAAATGTGACGAAGGGATATAAGAACAATCCAGATGCTAACAAGGCCGCATTCATGTTTGGATGGTTCCACACCGGCGATATCGGCTTCTTCGACTCTGACGGATATTTGCATCTCGTCGGCCGGATCAAGGAACTCATTAACCGAGGAGGTGAGAAGATCTCTCCGATTGAAGTAGACGCCGTGCTTCTATCCCACGCTGACATTGCTCAGGCCGTCGCCTTCGGAGTCCCTGACGAAAAGTACGGAGAAGAGATCAATTGCGCCATTATTCCAAGGGAGGGAAGTTCGATTGACGAAGCGGAGGTGCTACGATTTTGCAAGAAAAACCTTGCGTCCTTCAAGGAGTGTATTGTCGCGGCCGGAACGGAGAAAGCGAGAAAAGGGAACGACAATGTCAACGCTGCCAGAAAGATTATTTGCCATCTTCTACCATTTTTGAACCAAAACAGAGGGCCAGGGTTGGAGCTTTTTGCAGAACTTCTTTCAGCCTTGCTGTTTCTTGCTTGTAAAATGAATTTGGAGAGTCAAAACAAGAAGAAAGAGTATGCTGCTGATATTTTCTCCATAAAGGAGGCCCGAATGCGTATTCAACCTTTCATCCATCAAACCCCAGTTTTGTCTTCTGAGACTATTAATGCTGCTTCAGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCATTTAAATTCAGAGGTGCCTGCAATGCTATATTATCACTTGATGAGGACCAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAGTGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTTGGAGCAAAGACACAATACAGTCGAGGGAAACGACTGCCACGAAGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATAAGCGGGCAAGGTACCATCTCATTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATCGTTCCAATAAGTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCGGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCCGCTGGTAAGATAGTAAAACTGGCAGAGACCACCACCATAGCCGATGGTCTTCGAGCTTTTCTCGGTGACCTTACCTGGCCAATAATAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACACTGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAGTGCTGAAAGTTGTTGTGGAACCTAGTGGGGCAATAGGCCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAAGATTGCAACTGCATTGGCATTATACTTTCAGGAGGTAATGTTGATCTTGGCCATCCCCATGTGATTTTCCATTCCTTGGGAGACTTGTTTCCAATCCTTGGTTTATGCTGTGAAGCAAATATTGTCTAG 2661 48.33 MENCTLTGLLKKAAFEFPRCRALSVSGKFDLTHERLQELIEHAAARLVDAGVNAGDVVALTFPNTVEYVIMFLAVIRCRATAAPLNPAYTAEEFEFYLSDSESKLLLTSKEGIPSAQAAATKLNIPQVKADLSNGDEFIDLSPSATELKSNVAEIVNDPSDAALFLHTSGTTSRPKGVPLTQQNLAASVQNIKSVYKLSESDSTVLVLPLFHVHGLMAGLLSSLIAGAAVTLPAGGRFSASTFWSDMIAYNATWYTAVPTIHQIILDRHFSKPEPSYPKLRFIRSCSASLAPSILERLEKSFGAPVLESYAMTEASHLMASNPLPEDGVHKAGSVGKPIGQEMAILDENGVLQPEGVKGEVCIRGPNVTKGYKNNPDANKAAFMFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHADIAQAVAFGVPDEKYGEEINCAIIPREGSSIDEAEVLRFCKKNLASFKECIVAAGTEKARKGNDNVNAARKIICHLLPFLNQNRGPGLELFAELLSALLFLACKMNLESQNKKKEYAADIFSIKEARMRIQPFIHQTPVLSSETINAASGKQLFFKCECFQKGGAFKFRGACNAILSLDEDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPESAPKCKVENVIRYGGQVIWSKDTIQSRETTATKVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVKLAETTTIADGLRAFLGDLTWPIIRDLVDDVITVEDTEIVEAMRLCLEVLKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNCIGIILSGGNVDLGHPHVIFHSLGDLFPILGLCCEANIV 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2780406 2788877 + CmPI595203_01g002710.1 Cmu01g0271 405777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0271 886 FunFam L-threonine dehydratase catabolic TdcB 670 859 - -
Cmu01g0271 886 ProSitePatterns Putative AMP-binding domain signature. 165 176 IPR020845 -
Cmu01g0271 886 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 590 603 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Cmu01g0271 886 Gene3D - 561 859 IPR036052 -
Cmu01g0271 886 Pfam AMP-binding enzyme C-terminal domain 423 482 IPR025110 -
Cmu01g0271 886 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 552 861 IPR036052 -
Cmu01g0271 886 Gene3D - 408 491 IPR045851 -
Cmu01g0271 886 PANTHER ACYL-COA SYNTHETASE 3 481 - GO:0006631(PANTHER)|GO:0031956(PANTHER)
Cmu01g0271 886 Pfam AMP-binding enzyme 12 372 IPR000873 -
Cmu01g0271 886 CDD FACL_fum10p_like 18 480 IPR045310 GO:0016874(InterPro)
Cmu01g0271 886 Pfam Pyridoxal-phosphate dependent enzyme 562 833 IPR001926 -
Cmu01g0271 886 CDD Thr-dehyd 554 859 - -
Cmu01g0271 886 Gene3D - 1 407 IPR042099 -
Cmu01g0271 886 SUPERFAMILY Acetyl-CoA synthetase-like 5 480 - -
Cmu01g0271 886 Gene3D - 598 694 IPR036052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0271 K22133 - - csv:101220920 871.307
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0271 Cmu-Chr1:2780406 Cmu01g0435 Cmu-Chr1:4473795 3.60E-207 dispersed
Cmu01g0271 Cmu-Chr1:2780406 Cmu06g1391 Cmu-Chr6:25068067 3.60E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63