Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0298 ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTTTGTTCCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCCTCAACAACTCCCACCACTACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCGACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGAGATGCGGTTCTTAACTTCCCTTCCTCTCTTCCCACCTACCCTGTTCCCGCGTCAACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCGCTAATGCGTTGAAGAAAGCTGCGTCGTCGACTTCCCCGGTTGACGTTTGCACTACGGAAGATAGTAGCAATACCACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTGTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 747 49.93 MADQKLQINESQIDQSLHPPPPISKPIVIDPFVPSVPTSQNPNPKSQEGEGEQKQPNLPQQLPPLPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSLPTYPVPASTSPVDIRTAASTAAAATAANALKKAASSTSPVDVCTTEDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSYF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3042168 3042914 + CmPI595203_01g002980.1 Cmu01g0298 405804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0298 248 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0298 248 FunFam Ethylene-responsive transcription factor 2 80 138 - -
Cmu01g0298 248 MobiDBLite consensus disorder prediction 223 248 - -
Cmu01g0298 248 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0298 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 69 247 IPR045277 GO:0003700(InterPro)
Cmu01g0298 248 MobiDBLite consensus disorder prediction 34 58 - -
Cmu01g0298 248 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0298 248 MobiDBLite consensus disorder prediction 1 18 - -
Cmu01g0298 248 MobiDBLite consensus disorder prediction 1 82 - -
Cmu01g0298 248 Pfam AP2 domain 81 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0298 248 MobiDBLite consensus disorder prediction 227 248 - -
Cmu01g0298 248 SMART rav1_2 81 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0298 248 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0298 Cmu-Chr1:3042168 Cmu05g0879 Cmu-Chr5:7995791 8.20E-40 dispersed
Cmu01g0298 Cmu-Chr1:3042168 Cmu01g0299 Cmu-Chr1:3069107 4.20E-28 tandem
Cmu10g1201 Cmu-Chr10:4778255 Cmu01g0298 Cmu-Chr1:3042168 5.30E-51 transposed
Cmu01g0298 Cmu-Chr1:3042168 Cmu05g0878 Cmu-Chr5:7975740 2.20E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5446 PF00847 AP2 2.40E-10 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0298 - - - 0.0