Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0299 ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGACATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGATGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG 690 53.33 MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTADMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREDDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3069107 3069796 + CmPI595203_01g002990.1 Cmu01g0299 405805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0299 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0299 229 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0299 229 MobiDBLite consensus disorder prediction 158 178 - -
Cmu01g0299 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Cmu01g0299 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0299 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0299 229 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0299 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 229 IPR045277 GO:0003700(InterPro)
Cmu01g0299 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
Cmu01g0299 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu01g0299 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0299 Cmu-Chr1:3069107 Cmu01g0542 Cmu-Chr1:5743515 5.70E-56 dispersed
Cmu01g0298 Cmu-Chr1:3042168 Cmu01g0299 Cmu-Chr1:3069107 4.20E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5447 PF00847 AP2 1.30E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0299 - - - 0.0