Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0309 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTCCCGGTGGATCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCACCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGATGAGGACGACATTCCAATGGACTTTTCGCTGGACCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAGCTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAATGACATCCTTGAAGTCCAAGCGCAAGAGATAA 906 47.9 MQEPGLGMMTAPGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSMTSLKSKRKR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3174113 3177326 - CmPI595203_01g003090.1 Cmu01g0309 405815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0309 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g0309 301 Gene3D - 223 298 - -
Cmu01g0309 301 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cmu01g0309 301 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g0309 301 SUPERFAMILY Homeodomain-like 226 293 IPR009057 -
Cmu01g0309 301 FunFam homeobox protein knotted-1-like 3 isoform X1 225 286 - -
Cmu01g0309 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cmu01g0309 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu01g0309 301 CDD homeodomain 227 288 IPR001356 GO:0003677(InterPro)
Cmu01g0309 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu01g0309 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 292 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g0309 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cmu01g0309 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0309 Cmu-Chr1:3174113 Cmu08g1293 Cmu-Chr8:25176407 3.70E-103 dispersed
Cmu01g0309 Cmu-Chr1:3174113 Cmu05g1693 Cmu-Chr5:27039152 6.70E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5448 PF03791 KNOX2 7.60E-18 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0309 - - - 0.0