Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g0312 | ATGCCTCCTTTGCCTCTCCAAGGGTCACCGGCTGCAGTGGTTGTCTTCTCTGGTTTTTCCCCCATTTATCAACAATATATTTCAACCCTTACCCTTCAAGATTTACTCATAGAAGGTAAAGCTTTGAGAAGCAAAATGGTGAGAGGAAAAACACAAATGAAGCGGATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAGCTTTACGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG | 786 | 39.31 | MPPLPLQGSPAAVVVFSGFSPIYQQYISTLTLQDLLIEGKALRSKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTVEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNRQEIMDVETELFIGPPERRSNNNNGFL | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3215247 | 3220948 | + | CmPI595203_01g003120.1 | Cmu01g0312 | 405818 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g0312 | 261 | ProSitePatterns | MADS-box domain signature. | 48 | 102 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | SMART | madsneu2 | 46 | 105 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | SUPERFAMILY | SRF-like | 48 | 119 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | CDD | MADS_MEF2_like | 48 | 123 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cmu01g0312 | 261 | MobiDBLite | consensus disorder prediction | 217 | 238 | - | - | |
Cmu01g0312 | 261 | FunFam | Agamous-like MADS-box protein AGL13 | 58 | 124 | - | - | |
Cmu01g0312 | 261 | Coils | Coil | 166 | 186 | - | - | |
Cmu01g0312 | 261 | Coils | Coil | 188 | 215 | - | - | |
Cmu01g0312 | 261 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 46 | 228 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cmu01g0312 | 261 | MobiDBLite | consensus disorder prediction | 222 | 238 | - | - | |
Cmu01g0312 | 261 | ProSiteProfiles | MADS-box domain profile. | 46 | 106 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | PRINTS | MADS domain signature | 48 | 68 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | PRINTS | MADS domain signature | 68 | 83 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | PRINTS | MADS domain signature | 83 | 104 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | Pfam | K-box region | 133 | 216 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu01g0312 | 261 | Gene3D | - | 58 | 136 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu01g0312 | 261 | ProSiteProfiles | K-box domain profile. | 132 | 222 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cmu01g0312 | 261 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 55 | 102 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0312 | Cmu-Chr1:3215247 | Cmu06g0023 | Cmu-Chr6:256313 | 5.70E-52 | dispersed | |
Cmu01g0312 | Cmu-Chr1:3215247 | Cmu05g0216 | Cmu-Chr5:1805931 | 1.00E-32 | wgd | |
Cmu01g0312 | Cmu-Chr1:3215247 | Cmu05g0867 | Cmu-Chr5:7895124 | 3.40E-44 | wgd | |
Cmu01g0312 | Cmu-Chr1:3215247 | Cmu06g0022 | Cmu-Chr6:250391 | 1.60E-33 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5449 | PF01486 | K-box | 9.80E-22 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g0312 | - | - | - | 0.0 |