Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0312 ATGCCTCCTTTGCCTCTCCAAGGGTCACCGGCTGCAGTGGTTGTCTTCTCTGGTTTTTCCCCCATTTATCAACAATATATTTCAACCCTTACCCTTCAAGATTTACTCATAGAAGGTAAAGCTTTGAGAAGCAAAATGGTGAGAGGAAAAACACAAATGAAGCGGATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAGCTTTACGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG 786 39.31 MPPLPLQGSPAAVVVFSGFSPIYQQYISTLTLQDLLIEGKALRSKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTVEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNRQEIMDVETELFIGPPERRSNNNNGFL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3215247 3220948 + CmPI595203_01g003120.1 Cmu01g0312 405818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0312 261 ProSitePatterns MADS-box domain signature. 48 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 SMART madsneu2 46 105 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 SUPERFAMILY SRF-like 48 119 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 CDD MADS_MEF2_like 48 123 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu01g0312 261 MobiDBLite consensus disorder prediction 217 238 - -
Cmu01g0312 261 FunFam Agamous-like MADS-box protein AGL13 58 124 - -
Cmu01g0312 261 Coils Coil 166 186 - -
Cmu01g0312 261 Coils Coil 188 215 - -
Cmu01g0312 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 228 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu01g0312 261 MobiDBLite consensus disorder prediction 222 238 - -
Cmu01g0312 261 ProSiteProfiles MADS-box domain profile. 46 106 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 PRINTS MADS domain signature 48 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 PRINTS MADS domain signature 68 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 PRINTS MADS domain signature 83 104 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 Pfam K-box region 133 216 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g0312 261 Gene3D - 58 136 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu01g0312 261 ProSiteProfiles K-box domain profile. 132 222 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu01g0312 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0312 Cmu-Chr1:3215247 Cmu06g0023 Cmu-Chr6:256313 5.70E-52 dispersed
Cmu01g0312 Cmu-Chr1:3215247 Cmu05g0216 Cmu-Chr5:1805931 1.00E-32 wgd
Cmu01g0312 Cmu-Chr1:3215247 Cmu05g0867 Cmu-Chr5:7895124 3.40E-44 wgd
Cmu01g0312 Cmu-Chr1:3215247 Cmu06g0022 Cmu-Chr6:250391 1.60E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5449 PF01486 K-box 9.80E-22 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0312 - - - 0.0