Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0316 ATGGCTTCTTCTTCTTTAGGCTTTAACTTCTTCTTGGTGGCTTTGGTTTTGGCCATCTTCACCAGATCAACGCTCGCTGTGTTCCGACCAAGCTCATGGAACCTCGCTCATGCCACCTTTTATGGTGATGAAACTGCCTCCGAGACCATGGGTGGAGCTTGTGGGTACGGAAACTTGTTTACAAACGGGTATGGAACTGATACAGCGGCGTTAAGCTCAACACTGTTCAACAATGGCTATGCTTGTGGGACTTGCTTTCAAATCAAATGTGTGCAGTCCACGGCGTGCTACAAGAACGTGCAATTCACCACCGTGACGGCGACCAACTTGTGCCCACCAAATTGGTCGGAGGACTCCAATGCCGGCGGCTGGTGCAATCCACCAAGAGTTCACTTTGACATGGCCAAGCCCGCCTTCATGAAGATCGCCTGGTGGAAGGCCGGAATTATTCCCGTTCAGTACCGCAGGGTTCCATGTGTAAAAAAAGGAGGAGTTCGATTGAGCTTGCAAGGAAATGGATATTGGTTATTGGTGTATGTGATGAACGTAGGAGGAGGAGGTGATGTATCTTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAATTGGGGAGCTTCATATCAAGCTTTTGCTTCATTGGGTGGTCAAGGCCTCTCTTTTAGAATCACTTCTTACACAACCAGAGAGACCCTTACTTTATGGAATGTCATTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATCTCAACTTCCATTGA 780 47.05 MASSSLGFNFFLVALVLAIFTRSTLAVFRPSSWNLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSTACYKNVQFTTVTATNLCPPNWSEDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQYRRVPCVKKGGVRLSLQGNGYWLLVYVMNVGGGGDVSSMAVKGSKTGWITMSHNWGASYQAFASLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNSNLNFH 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3265472 3267584 - CmPI595203_01g003160.1 Cmu01g0316 405822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0316 259 Gene3D - 164 259 IPR036749 -
Cmu01g0316 259 Pfam Expansin C-terminal domain 165 243 IPR007117 -
Cmu01g0316 259 CDD DPBB_EXPA_N 33 159 - -
Cmu01g0316 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Cmu01g0316 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Cmu01g0316 259 Gene3D - 18 159 IPR036908 -
Cmu01g0316 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cmu01g0316 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cmu01g0316 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cmu01g0316 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cmu01g0316 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cmu01g0316 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cmu01g0316 259 PANTHER EXPANSIN-A15 14 254 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
Cmu01g0316 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Cmu01g0316 259 SMART dpbb_1 68 154 IPR007112 -
Cmu01g0316 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cmu01g0316 259 SUPERFAMILY PHL pollen allergen 161 254 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0316 Cmu-Chr1:3265472 Cmu07g0379 Cmu-Chr7:3820281 3.10E-74 dispersed
Cmu01g0316 Cmu-Chr1:3265472 Cmu10g1177 Cmu-Chr10:4430330 3.10E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0316 - - - 0.0