Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0336 ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCTAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTACGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGTTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA 912 53.62 MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3493306 3494217 - CmPI595203_01g003360.1 Cmu01g0336 405842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0336 303 CDD DUF296 102 168 IPR005175 -
Cmu01g0336 303 MobiDBLite consensus disorder prediction 244 270 - -
Cmu01g0336 303 MobiDBLite consensus disorder prediction 223 283 - -
Cmu01g0336 303 MobiDBLite consensus disorder prediction 1 93 - -
Cmu01g0336 303 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Cmu01g0336 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 229 - -
Cmu01g0336 303 FunFam AT-hook motif nuclear-localized protein 101 228 - -
Cmu01g0336 303 MobiDBLite consensus disorder prediction 19 34 - -
Cmu01g0336 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 214 IPR005175 -
Cmu01g0336 303 MobiDBLite consensus disorder prediction 35 53 - -
Cmu01g0336 303 PIRSF ESCAROLA 12 303 IPR014476 GO:0003680(InterPro)
Cmu01g0336 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 303 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cmu01g0336 303 Gene3D - 101 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0336 Cmu-Chr1:3493306 Cmu05g0282 Cmu-Chr5:2403443 4.60E-69 dispersed
Cmu01g0336 Cmu-Chr1:3493306 Cmu01g0339 Cmu-Chr1:3560221 9.70E-19 proximal
Cmu06g1499 Cmu-Chr6:26272193 Cmu01g0336 Cmu-Chr1:3493306 7.70E-63 transposed
Cmu01g0336 Cmu-Chr1:3493306 Cmu05g0237 Cmu-Chr5:2007412 2.30E-68 wgd
Cmu01g0336 Cmu-Chr1:3493306 Cmu06g0032 Cmu-Chr6:337616 9.60E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0336 - - - 0.0