Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0339 ATGGAGGGAAGGGATGGTGGTGGCGCAAGTAGTGGGGTTACTGTGGTAGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAAGTAACTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGACCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGGAAATTTTACACCTCATATCATCACTGTCAATGCAGGGGAGGATGTCACCATGAAGATTATATCCTTTTCTCAACAAGGGCCTCGAGCCATATGCATTTTATCTGCGAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGATTCATCTGGAGGAACACTAACTTATGAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAACGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCGAAAAAGCCAAAACATGATACTATTTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTTGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCAATGCTGCCAACTGATTCAAGGAATAAGTCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 993 50.45 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAQVTAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGGNFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3560221 3563860 + CmPI595203_01g003390.1 Cmu01g0339 405845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0339 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 309 IPR039605 GO:0003680(InterPro)
Cmu01g0339 330 MobiDBLite consensus disorder prediction 1 113 - -
Cmu01g0339 330 MobiDBLite consensus disorder prediction 29 64 - -
Cmu01g0339 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
Cmu01g0339 330 MobiDBLite consensus disorder prediction 264 330 - -
Cmu01g0339 330 Gene3D - 147 276 - -
Cmu01g0339 330 MobiDBLite consensus disorder prediction 294 330 - -
Cmu01g0339 330 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Cmu01g0339 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Cmu01g0339 330 CDD DUF296 146 237 IPR005175 -
Cmu01g0339 330 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0339 Cmu-Chr1:3560221 Cmu05g0243 Cmu-Chr5:2072941 3.90E-90 dispersed
Cmu01g0336 Cmu-Chr1:3493306 Cmu01g0339 Cmu-Chr1:3560221 9.70E-19 proximal
Cmu04g1010 Cmu-Chr4:24658904 Cmu01g0339 Cmu-Chr1:3560221 2.00E-14 transposed
Cmu11g0043 Cmu-Chr11:906003 Cmu01g0339 Cmu-Chr1:3560221 1.30E-106 transposed
Cmu01g0339 Cmu-Chr1:3560221 Cmu05g0837 Cmu-Chr5:7562881 1.60E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0339 - - - 0.0