Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu01g0368 | ATGAAAACAACAGAGAAAGGAAAGGAAAAAGAAAAGGCAGATCCAAGGAAGATAATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA | 783 | 44.32 | MKTTEKGKEKEKADPRKIMSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF | 260 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3862439 | 3865524 | - | CmPI595203_01g003680.1 | Cmu01g0368 | 405874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu01g0368 | 260 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Cmu01g0368 | 260 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cmu01g0368 | 260 | Gene3D | High mobility group box domain | 164 | 225 | IPR036910 | - | |
Cmu01g0368 | 260 | PANTHER | PROTEIN YABBY 6-RELATED | 57 | 230 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER) | |
Cmu01g0368 | 260 | CDD | HMG-box_SF | 175 | 211 | - | - | |
Cmu01g0368 | 260 | FunFam | Axial regulator YABBY | 166 | 237 | - | - | |
Cmu01g0368 | 260 | MobiDBLite | consensus disorder prediction | 18 | 49 | - | - | |
Cmu01g0368 | 260 | Pfam | YABBY protein | 57 | 221 | IPR006780 | GO:0007275(InterPro) | |
Cmu01g0368 | 260 | SUPERFAMILY | HMG-box | 166 | 214 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0368 | Cmu-Chr1:3862439 | Cmu02g2236 | Cmu-Chr2:35963406 | 5.70E-44 | dispersed | |
Cmu05g2416 | Cmu-Chr5:33299877 | Cmu01g0368 | Cmu-Chr1:3862439 | 1.30E-22 | transposed | |
Cmu05g2432 | Cmu-Chr5:33413880 | Cmu01g0368 | Cmu-Chr1:3862439 | 1.30E-22 | transposed | |
Cmu01g0368 | Cmu-Chr1:3862439 | Cmu10g1134 | Cmu-Chr10:3966563 | 1.80E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5456 | PF04690 | YABBY | 3.70E-70 | CL0114 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu01g0368 | K25796 | - | csv:101214748 | 431.409 |