Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0368 ATGAAAACAACAGAGAAAGGAAAGGAAAAAGAAAAGGCAGATCCAAGGAAGATAATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 783 44.32 MKTTEKGKEKEKADPRKIMSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3862439 3865524 - CmPI595203_01g003680.1 Cmu01g0368 405874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0368 260 MobiDBLite consensus disorder prediction 1 49 - -
Cmu01g0368 260 MobiDBLite consensus disorder prediction 1 17 - -
Cmu01g0368 260 Gene3D High mobility group box domain 164 225 IPR036910 -
Cmu01g0368 260 PANTHER PROTEIN YABBY 6-RELATED 57 230 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cmu01g0368 260 CDD HMG-box_SF 175 211 - -
Cmu01g0368 260 FunFam Axial regulator YABBY 166 237 - -
Cmu01g0368 260 MobiDBLite consensus disorder prediction 18 49 - -
Cmu01g0368 260 Pfam YABBY protein 57 221 IPR006780 GO:0007275(InterPro)
Cmu01g0368 260 SUPERFAMILY HMG-box 166 214 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0368 Cmu-Chr1:3862439 Cmu02g2236 Cmu-Chr2:35963406 5.70E-44 dispersed
Cmu05g2416 Cmu-Chr5:33299877 Cmu01g0368 Cmu-Chr1:3862439 1.30E-22 transposed
Cmu05g2432 Cmu-Chr5:33413880 Cmu01g0368 Cmu-Chr1:3862439 1.30E-22 transposed
Cmu01g0368 Cmu-Chr1:3862439 Cmu10g1134 Cmu-Chr10:3966563 1.80E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5456 PF04690 YABBY 3.70E-70 CL0114 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0368 K25796 - csv:101214748 431.409