Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0398 ATGGCATTCCTTTTTCCCTCATTTTTCTTCTCCACTTTCTTTCTCCTATGCTTTTCCGCTGCCGCCAAGCACCGCCACCACTGGGTCGAACCCACCGGACACCGCCTCATCAAAGTGAATGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTGCAAGCCGCCGTGGATGCAGTTCCCGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTATATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAACTCCGTACTTATAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGAATCTCCGGCGACAAAGCCTACTTTTCCGGCTGCGGATTCTACGGAGCACAAGATACGCTTTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTCTGAGAAGACCGGGTTTGCTTTTCTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGCCGAGCCATGGGCCAGTACTCCAGAATCGTCTATGCGTATACTTACTTTGATGATGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCTAGAGAATTGGAGTATGAAGAGGCCCATCCATTTCTTGCCAAAAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 1020 53.14 MAFLFPSFFFSTFFLLCFSAAAKHRHHWVEPTGHRLIKVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPSEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEYEEAHPFLAKSFVNGRHWIAPSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4163596 4170296 + CmPI595203_01g003980.1 Cmu01g0398 405904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0398 339 Pfam Pectinesterase 42 330 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu01g0398 339 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Cmu01g0398 339 FunFam Pectinesterase 32 336 - -
Cmu01g0398 339 SUPERFAMILY Pectin lyase-like 37 336 IPR011050 -
Cmu01g0398 339 Gene3D - 35 338 IPR012334 -
Cmu01g0398 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 335 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0398 Cmu-Chr1:4163596 Cmu03g2200 Cmu-Chr3:30500850 1.20E-86 dispersed
Cmu01g0398 Cmu-Chr1:4163596 Cmu11g0438 Cmu-Chr11:4806799 9.70E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0398 - - - 0.0