Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0405 ATGGTGAAGTTGGCCGTGGGCTCCGCCGCCGATTCATTCAGTGCGGCCTCTCTTAAAGCCTATCTCTCTGAATTCATCGCCACTCTCCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATGCACCAGGTTTGGTGGCAGTGGCAGTGGCTCACGCATTTGCATTGTTCGTCGGTGTGTCGATGGCAGCGAACATCTCCGGCGGCCACCTAAACCCGGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAATTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTTCAATTCGTTACCAACGGCAAGAGTATTCCGACCCACGGCGTGGCGGCGGGACTGGGAGCAATTGAAGGCGTAGTATTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCCAAAAAGGGTTCTCTTGGAACGATTGCCCCAATTGCTATCGGCTTCATTGTGGGTGCCAACATTCTCGCCGCCGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTCAGCGGAGACTTCTCTCAGATTTGGATCTATTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGCCTTATCTATGGCGACGTCTTTATTTCCTCTTATGCCCCTGTTCCTGTCTCTGGTGATTATGCTTAA 753 55.91 MVKLAVGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDAPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4241537 4244196 + CmPI595203_01g004050.1 Cmu01g0405 405911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0405 250 PANTHER AQUAPORIN-8 3 239 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cmu01g0405 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Cmu01g0405 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cmu01g0405 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Cmu01g0405 250 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Cmu01g0405 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0405 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0405 Cmu-Chr1:4241537 Cmu09g0176 Cmu-Chr9:1930694 6.60E-98 dispersed
Cmu01g0405 Cmu-Chr1:4241537 Cmu04g0978 Cmu-Chr4:24221808 1.10E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0405 K09873 - csv:101203925 465.307