Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0421 ATGGCGGAAGAAGGAAGTTCCAAGAATTCAACCACTAAGGATTCCCAATCATATCTCAAGAGAGTGAAGGAAACATTTCAAAACGATAGAGAAAAGTATGAACACTTCCTTCGAGTATTCCAAGATTTCAGGGCCCAAAGAATTGATACTGCGGAAATCTTTGCAACAGTAATGGACTTGTTTCAAGACCACCCAGATCTTATTTTGGGCTTCAATATGTTTTTGCCCAAGAACTGTGAGATCATTCTTGCACCCCAGGAGGATGATCATGATCCACCTCCACAAAACAAATAA 294 40.14 MAEEGSSKNSTTKDSQSYLKRVKETFQNDREKYEHFLRVFQDFRAQRIDTAEIFATVMDLFQDHPDLILGFNMFLPKNCEIILAPQEDDHDPPPQNK 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4386553 4386846 - CmPI595203_01g004210.1 Cmu01g0421 405927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0421 97 PANTHER SIN3B-RELATED 7 89 IPR039774 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0000785(PANTHER)|GO:0003714(InterPro)|GO:0003714(PANTHER)
Cmu01g0421 97 SUPERFAMILY PAH2 domain 7 77 IPR036600 GO:0006355(InterPro)
Cmu01g0421 97 FunFam Paired amphipathic helix protein Sin3 14 76 - -
Cmu01g0421 97 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355(InterPro)
Cmu01g0421 97 ProSiteProfiles PAH domain profile. 8 78 IPR003822 GO:0006355(InterPro)
Cmu01g0421 97 Pfam Paired amphipathic helix repeat 31 75 IPR003822 GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0421 K11644 - - csv:101208532 103.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0421 Cmu-Chr1:4386553 Cmu09g2112 Cmu-Chr9:37243181 7.70E-18 dispersed
Cmu01g0421 Cmu-Chr1:4386553 Cmu01g0423 Cmu-Chr1:4392312 9.00E-27 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g542 . . . Bda08g00594 Bpe05g00563 . . . Cmo06g00822 Cmo16g01170 Cma02g01561 . Car02g01321 . . Cpe14g00927 Cpe05g00232 . . . . . . . Cla10g00233 Cam10g0239 Cec10g0246 Cco10g0246 Clacu10g0241 Cmu10g1084 Cre10g0492 . . Cone6ag0652 Cone9ag0655 Lsi07g01276 Csa05g00449 Chy09g01062 Cme06g02548 . . . . . . Bma05g00745 . . Cmo02g01600 . Cma06g00801 Cma16g01119 . Car16g01056 Cpe08g00725 . . . . . . . . Cla01g00418 Cam01g0438 Cec01g0429 Cco01g0451 Clacu01g0439 Cmu01g0421 Cre09g2092 Lsi09g00448 Csa03g00251 Chy06g02073 Cme09g01595
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013218 1 0 0 1 0 2 1 2 2 0 1 2 1 1 1 1 2 0 1 2 0 1 1 0 0 0 1 1 0 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5459 PF02671 PAH 7.80E-16 No_clan Cmu TR