Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0435 ATGGGTCTTCCAACTCTCACCGGATTGTTGAAAACTGTCGCCGGACAGTTCCCTGATCGGAGAGCCTTATCCGTATCTGGAAAGTTCGATCTCTCACATTCCCGCCTCCAACACCTCGTTGATTCCGCCGCCTCAAAACTCGCCGCCGCCGGTGTCAAACCCGGAGACGTCGTTGCCCTTGTCTTTCCAAACACCGTCGAGTTTGTGATCATGTTTTTGGCTGTGATCCGAGCTCGAGCCACGGCGGCGCCACTCAACGCCGCCTACACGGCGGAGGAGTTCGAATTTTACTTATCGGACTCCGTATCGAAGCTTTTAGTAACCTCTATAGAAGGCAACGGCCCCGCTGAAACGGCAGCGTCTAAACTCAACATCCAACACATGACCGCTGCGCTTCCCGATGCACATGCCGAGTTGGTTCTCTCCTTCAGTCCGTCCAACTCGAACGATTTTGACTCCGACTCAGTTCTTGAAATCGTCAATGACGGATCCGACGTGGCATTATTCCTCCACACGTCAGGCACCACGAGCCGCCCAAAAGGCGTCCCATTGACTCAGTTTAATTTGGCCTCTTCAGTTAACAACATTAAATCGGTTTACCAACTCAATGATTCCGACTCGACCGTCATTGTCCTTCCTTTGTTCCACGTCCACGGTTTAATGGCTGGATTACTCAGTTCACTCGCTGCCGGAGCCGCCGTGGCTCTACCGGCTGCCGGGAGATTCTCGGCGTCGACATTTTGGGCCGACATGGTCCAATACAACGCCACGTGGTACACTGCCGTCCCTACGATCCACCAGATCATACTGGATCGGCACTCGACTAAACCGGAAACGGTTTACCCGAAGCTCCGGTTCATTAGAAGCTGCAGTGCGTCGTTGGCTCCGGCTATCTTGAACCGGTTGGAGGAGGCGTTTGGAGCGCCGGTTCTGGAGGCGTACGCGATGACGGAAGCGACACATCTGATGTCGTCGAACCCACTGCCGGAAAACGGTCCGCACAAGGCCGGGTCGGTGGGGAAACCGGTGGGTCTAGAAATGGTGATATTGGATGAAAACGGCGTCGTTCAGGAGGCGACTGTGAAAGGTGAAGTTTGTATTAAGGGTCCGAATGTGACGAAGGGATATAAAAGCAATCCGGTAGCGAACGAGGAAGCGTTCCGGTACGGGTGGTTCCACACTGGAGATATTGGGTACTTCGATTCTGATGGGTATTTACATCTCGTCGGTCGGATCAAGGAGCTGATCAACCGTGGAGGGGAAAAGATATCGCCGATTGAAGTGGACGCCGTGCTGTTGGCTCATCCGGACGTGGCTCAAGCTGTCGCATTTGGAGTTCCCGACGACAAGTATGGAGAGGAGATAAACTGCGCAATAATCCGAAGAGAAGGATCAAAGATTGGAGAGGAAGATGTATTGAGCTTCTGCAGGAACAATTTAGCTGCTTTCAAAGTCCCTAAGAAAGTCTTTCTCACCGATTCACTCCCCAAAACTGCTTCCGGCAAAATACAACGTCGAATCGTAGCCGCTCATTTCCTTCAACAAAAATCATGA 1554 52.57 MGLPTLTGLLKTVAGQFPDRRALSVSGKFDLSHSRLQHLVDSAASKLAAAGVKPGDVVALVFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSVSKLLVTSIEGNGPAETAASKLNIQHMTAALPDAHAELVLSFSPSNSNDFDSDSVLEIVNDGSDVALFLHTSGTTSRPKGVPLTQFNLASSVNNIKSVYQLNDSDSTVIVLPLFHVHGLMAGLLSSLAAGAAVALPAAGRFSASTFWADMVQYNATWYTAVPTIHQIILDRHSTKPETVYPKLRFIRSCSASLAPAILNRLEEAFGAPVLEAYAMTEATHLMSSNPLPENGPHKAGSVGKPVGLEMVILDENGVVQEATVKGEVCIKGPNVTKGYKSNPVANEEAFRYGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLAHPDVAQAVAFGVPDDKYGEEINCAIIRREGSKIGEEDVLSFCRNNLAAFKVPKKVFLTDSLPKTASGKIQRRIVAAHFLQQKS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4473795 4477592 - CmPI595203_01g004350.1 Cmu01g0435 405941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0435 517 Gene3D - 5 411 IPR042099 -
Cmu01g0435 517 Pfam AMP-binding enzyme C-terminal domain 427 502 IPR025110 -
Cmu01g0435 517 PANTHER ACYL-COA SYNTHETASE 5 515 - GO:0006631(PANTHER)|GO:0031956(PANTHER)
Cmu01g0435 517 FunFam 4-coumarate--CoA ligase 2 414 515 - -
Cmu01g0435 517 Gene3D - 412 514 IPR045851 -
Cmu01g0435 517 SUPERFAMILY Acetyl-CoA synthetase-like 5 514 - -
Cmu01g0435 517 ProSitePatterns Putative AMP-binding domain signature. 169 180 IPR020845 -
Cmu01g0435 517 FunFam Peroxisomal-coenzyme A synthetase 5 411 - -
Cmu01g0435 517 CDD FACL_fum10p_like 18 509 IPR045310 GO:0016874(InterPro)
Cmu01g0435 517 Pfam AMP-binding enzyme 12 376 IPR000873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0435 K22133 - - csv:101220634 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0271 Cmu-Chr1:2780406 Cmu01g0435 Cmu-Chr1:4473795 3.60E-207 dispersed
Cmu01g0435 Cmu-Chr1:4473795 Cmu03g0895 Cmu-Chr3:3500142 9.60E-51 dispersed
Cmu01g0435 Cmu-Chr1:4473795 Cmu01g2028 Cmu-Chr1:33381216 3.90E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g689 . Blo15g00167 . . . Bpe07g00938 . . . . . Cma15g01097 . Car15g01008 . . . . . . . . . . Cla01g00434 Cam01g0457 Cec01g0446 Cco01g0468 Clacu01g0456 Cmu01g0435 Cre09g2077 . . . . . . Chy09g01213 . . . Bda06g00683 . . . . Bma12g01121 . . Cmo15g01155 . . . . . Cpe13g00254 Bhi12g00510 . . Lac11g0027 Hepe06g0701 . Lcy12g0025 . . . . . . . . . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63