Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0444 ATGGATTCATCTTCAAAGGTCAATTCGGAGCTCACAAGAGTTCCCAAGGGTTTCAACGAGGAGCGAAAAGTGAGGGTGGTCGTTAAGATCAAAAGCTTGCCTGGTCAGGAACTAGATGGAGGATCTACGGCGTCGTGGATCTCTGTACACAAGCCTGATGGAGATGCTTCCAACTCTGTAACCATTTCTTTTGGAGATCAACCAGTGAGTCGTAAGGAGATCTATGAAGTAGATTATTGCTATGGGCAAGATGAAGACACCGAAAACATATTTGCAAGAGAGGTGAAGTCTCTGATTCCTGGAGTCTTTGATGGTCGTCATGCAACAGTTATTGCATATGGTGCAAGAGGCACTGGGAAAACTTCTACAATTCAGGGTACTATTGAGAAACCGGGTTTGGCATCATTATCCATTAATGAATTACTTTTAATGGCCAAAGAAAAAGGGAAATCAATTTCCATATCATACTATGAAGTTTATATGGACTACGTTTATGATTTACTGGATCCGAAACGACCAACCGTCTTCGTATTGGATAATGGTCAAGGCAAAATACAACTGAAGGGACTATCACGGATTCCAGTGAAATCTCTGTCAGACTTCTATGGACTATATTTCGCCGGTTCTAGTTCAAATAAACAAGGGCAAAAGAATACAAATGAACCCCCTCCTAGAAGCCACAGGGGCTTGATAGTGCATATTTCATCTACCAATGAGATTGCTTCAGAAACTCGTTTTGTTTCCAAGATGAATTTTGTTGACATGGCTGGCTATGAAGATGCGAGAAGGAGAAGTACTGATGGCACGAGCCTCGTCGAAAATAGTAAAATTAACAAGTCCATATATGCCTTGTTGAATGTTGCTTCTGCGTTGAATTCAAATGATAACCATGTGCCATATCGTGAAAGTAAGCTTACACGCATTCTGCAAGATTCCTTGGGAGGAGCGCAAAGCAGGATTTTGATGATTAGTTGCTTGAATTCATCATTTTGCCAAGACTCCATCTACATGGCTAACTTAGCAGCTAGATCTTGTCAAATAACCAAGCGAGTTGCTTCAAGTGCCATTAGGAAAATGAAGAGTTCGACAAATTCTGTGGCGCATTCATCACTTAAAAACCAGATACCTAAGAGTGTTTCTGCAACTGCAAAGAACCGGACTATCTCCCGATCTTCTTTTTCAGAAAAGAAGGCTAGTGTTAGTACAACCTCCTCTACAATGAAAGGAAGGAAGTTGTTTGATGATGCAACAAGTTATTTGGGAAAACTGGACAAGGAAACTAAACTGTCAAGTGCATCTTCTAAACGTGTACCTCAGAAGAATGGAGGACTTACATCTGTTGTGGACCAAGTGAAACCATTGCCATGTTCTTTAAAGCCTGAAGGAGAATCTACTTCTGCATTGGAAAAGGAATTGCCTGCTACAGAAATTTCTAGTGCAGTAGAAACTACCATTATGCCAGAGGGTGTTGCTAATAGCAATCAGGATCCTGAAAAAGTCGATGATAGCGTGAATGTATCATCTGCCATTGGAGATGGTAAAAACATCAACGAGGAAAACAATTACTCAATGATCAATATTGACGACCATCCCGTGGAAAGCACACCTGAGGTGACCAGTAGCACAAATTTGTCTTTTGTTCAAAGCTCATATTTGGATAAGGAAAACAATAGTCATATGATCAATGAAGATTCATCTCCTCCAATTAGTGCACGATTACGTGCATTATCAAATAGTTTGAGATTAATTTGTTCCACTACACCAGTGTGTTTAAAGATCTCTAACAGTCAAGATCCTTGTGGCTTAGTCTCTGCTGATGCTGTTGTGGAACCACAGACTCCAACAATGGAACCGAGTTTGCAAGTTTATGATGAACAAGATGGTGCGAATCCAACTACTCCTTGGGAAACATTAAGCAAGCGCAGTGCGACTTTGAAGAAGTTACTTAACGATCATCTTGTGAAGTTTATTAACTCAGCTAGCAAGGAGGAATTGAAACAACTGAATGGTATTGGAGAGAAGAGAGCAACATCAATTATCAAACTTCGTGAAGAATCACCGGAACCTTTTAAGACTCTTGATGATTTAATGGAGATTGGACTATCAGCAAAGCAGATTAAAGGATTGATGAAAAAAGAAGTTGGAGAGCTATTATTTAACTAG 2163 40.18 MDSSSKVNSELTRVPKGFNEERKVRVVVKIKSLPGQELDGGSTASWISVHKPDGDASNSVTISFGDQPVSRKEIYEVDYCYGQDEDTENIFAREVKSLIPGVFDGRHATVIAYGARGTGKTSTIQGTIEKPGLASLSINELLLMAKEKGKSISISYYEVYMDYVYDLLDPKRPTVFVLDNGQGKIQLKGLSRIPVKSLSDFYGLYFAGSSSNKQGQKNTNEPPPRSHRGLIVHISSTNEIASETRFVSKMNFVDMAGYEDARRRSTDGTSLVENSKINKSIYALLNVASALNSNDNHVPYRESKLTRILQDSLGGAQSRILMISCLNSSFCQDSIYMANLAARSCQITKRVASSAIRKMKSSTNSVAHSSLKNQIPKSVSATAKNRTISRSSFSEKKASVSTTSSTMKGRKLFDDATSYLGKLDKETKLSSASSKRVPQKNGGLTSVVDQVKPLPCSLKPEGESTSALEKELPATEISSAVETTIMPEGVANSNQDPEKVDDSVNVSSAIGDGKNINEENNYSMINIDDHPVESTPEVTSSTNLSFVQSSYLDKENNSHMINEDSSPPISARLRALSNSLRLICSTTPVCLKISNSQDPCGLVSADAVVEPQTPTMEPSLQVYDEQDGANPTTPWETLSKRSATLKKLLNDHLVKFINSASKEELKQLNGIGEKRATSIIKLREESPEPFKTLDDLMEIGLSAKQIKGLMKKEVGELLFN 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4587402 4593223 - CmPI595203_01g004440.1 Cmu01g0444 405950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0444 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 358 IPR027417 -
Cmu01g0444 720 Gene3D Kinesin motor domain 8 347 IPR036961 -
Cmu01g0444 720 Pfam Helix-hairpin-helix motif 657 699 - -
Cmu01g0444 720 SMART kinesin_4 21 355 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu01g0444 720 SUPERFAMILY RuvA domain 2-like 654 712 IPR010994 -
Cmu01g0444 720 PANTHER KINESIN-RELATED 23 550 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(InterPro)|GO:0007018(PANTHER)|GO:0008017(PANTHER)|GO:0008574(PANTHER)|GO:0016887(PANTHER)
Cmu01g0444 720 FunFam Kinesin-like protein KIN-10C 643 717 - -
Cmu01g0444 720 PRINTS Kinesin heavy chain signature 249 267 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu01g0444 720 PRINTS Kinesin heavy chain signature 105 126 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu01g0444 720 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu01g0444 720 PRINTS Kinesin heavy chain signature 298 319 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu01g0444 720 ProSiteProfiles Kinesin motor domain profile. 23 347 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cmu01g0444 720 Gene3D - 642 717 - -
Cmu01g0444 720 Pfam Kinesin motor domain 66 343 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0444 K10403 - - csv:101218738 1130.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0444 Cmu-Chr1:4587402 Cmu02g1564 Cmu-Chr2:29493117 1.30E-32 dispersed
Cmu10g2825 Cmu-Chr10:34787032 Cmu01g0444 Cmu-Chr1:4587402 2.30E-75 transposed
Cmu01g0444 Cmu-Chr1:4587402 Cmu05g0236 Cmu-Chr5:1993604 2.70E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34