Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0448 ATGGTGATTTACGGTTCCTCTGCTGCACTACAGTGTTCTTTTGAGGCACAGCGAACTTGGGCATCTCTAGGGGGAAATTCTGCCTGTGAAGGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATTACTAGTGTTCCAACGCCAATGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATCGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAATAATAGAAGAGGTTACAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACAGCCGCCTAATACGGGGACAAATGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCAGTTCAAGCTTAGTTACCTCCTACTCTCATTTCCCTTCTCCTTCCTCTTCCTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGACAAAACCGAGCCTCATTAAAGTCAACCGTTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGCAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAGTGTTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGCAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGGATCAAGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTTGCTGACGAGGCACGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCTGCAATTCGCTGCCGTCGTCCTCAGCTGTCGCCTCCCTCGCCACTACTGATCACCGCCGCCGTCACAAATCGGTTGAGGGTAAGGGAGGATAAGATGGCTCGAAATGAGGAGAAAGCACAGTCGATGCTAAATCGTTTCATAGCCTTAAAAGCTGAGGAGAAGAAGAAACCCAAGGAACGCCGACCCTACCTTGCCTCTGAGTGTCGTGACCTTGCGGAAGCTGACAAATGGCGTCAACAAATCATGCGTGAGATTGGTCGTAAGGTTGCAGAGATCCAAAATGAAGGCCTTGGTGAGCACCGTTTGCGTGATCTCAATGATGAGATTAACAAGCTCATTAGAGAGAAGTTACATTGGGAGCGTCGTATAATTGAGCTAGGTGGCCCCAATTATACCAAACACTCGGCCAAAATGACTGATTTAGAGGGGAATATTGTTGATGTACCAAACCCCAGTGGTCGTGGTCCTGGATATCGGTATTTCGGTGCTGCTAAGAAGTTACCAGGTGTTAGGGAATTGTTTGAGAAGCCACCTGAACTGCGGAAACGCAGGACTCGTTATGACATATACAAGAGGATTGACGCAAGCTACTATGGCTACAGGGACGACGAAGATGGAGTTTTGGAAAGAGTGGAAGGTCCAAGTGAAGAGCGTATGAGAGCCGAGGCAGTTGAAGAGTGGCAAAGAATGGAAGAGATAAGGAAAGAAGCGAAGAGGGCAGTAAAGAGTGGGGAGGTAGCCAGCGTGGTGAATGTTGCAGCGAAGGAGGTACTATTTGAAGAGGAGGAAGAGGTTGTTGAAGAAGAGAGGAAGAGAGAGAGGGAAATGAAGGAGAATTTGGACAAGGAGAGGGAGTTTGTGGTGCATGTGCCATTACCTGATGAAAAGGAGATTGAGAAGATGGTATTGGAGAAGAAGAAGATGGAATTGTTGAGCAAGTATGCGAGTGATATGCTTTTAGAGGAACAGAATGAAGCCAAGTCCATGCTTAATATACAGAGATAG 3522 43.95 MVIYGSSAALQCSFEAQRTWASLGGNSACEGSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPMGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTIIEEVTKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIQPPNTGTNVSIKDDASEASSANSYSSHTSGSLTDSSSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTTKPSLIKVNRSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPADYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHESVLQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKDQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIRCRRPQLSPPSPLLITAAVTNRLRVREDKMARNEEKAQSMLNRFIALKAEEKKKPKERRPYLASECRDLAEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKLHWERRIIELGGPNYTKHSAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPSEERMRAEAVEEWQRMEEIRKEAKRAVKSGEVASVVNVAAKEVLFEEEEEVVEEERKREREMKENLDKEREFVVHVPLPDEKEIEKMVLEKKKMELLSKYASDMLLEEQNEAKSMLNIQR 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4645907 4660655 + CmPI595203_01g004480.1 Cmu01g0448 405954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0448 1173 PANTHER OS02G0152300 PROTEIN 62 841 IPR051348 -
Cmu01g0448 1173 SUPERFAMILY Protein kinase-like (PK-like) 476 752 IPR011009 -
Cmu01g0448 1173 Pfam Isy1-like splicing family 871 1152 IPR009360 GO:0000350(InterPro)
Cmu01g0448 1173 SMART Ubox_2 782 844 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g0448 1173 Coils Coil 941 961 - -
Cmu01g0448 1173 ProSiteProfiles U-box domain profile. 778 851 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g0448 1173 FunFam pre-mRNA-splicing factor ISY1 homolog 909 966 - -
Cmu01g0448 1173 SMART serkin_6 496 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0448 1173 Coils Coil 1097 1124 - -
Cmu01g0448 1173 Pfam U-box domain 779 842 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu01g0448 1173 ProSiteProfiles Protein kinase domain profile. 496 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0448 1173 Gene3D Phosphorylase Kinase; domain 1 475 568 - -
Cmu01g0448 1173 Coils Coil 397 445 - -
Cmu01g0448 1173 Gene3D HUPs 51 210 IPR014729 -
Cmu01g0448 1173 Coils Coil 369 389 - -
Cmu01g0448 1173 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 192 - -
Cmu01g0448 1173 Gene3D Helix hairpin bin 909 966 IPR029012 -
Cmu01g0448 1173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 778 847 IPR013083 -
Cmu01g0448 1173 ProSitePatterns Protein kinases ATP-binding region signature. 502 523 IPR017441 GO:0005524(InterPro)
Cmu01g0448 1173 CDD STK_N 61 213 - -
Cmu01g0448 1173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu01g0448 1173 SUPERFAMILY RING/U-box 773 842 - -
Cmu01g0448 1173 Pfam Protein kinase domain 499 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu01g0448 1173 SUPERFAMILY ISY1 domain-like 897 972 IPR037200 GO:0000350(InterPro)
Cmu01g0448 1173 CDD RING-Ubox_WDSUB1-like 780 834 - -
Cmu01g0448 1173 Gene3D Transferase(Phosphotransferase) domain 1 569 774 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0448 Cmu-Chr1:4645907 Cmu11g0163 Cmu-Chr11:2098871 1.90E-126 dispersed
Cmu09g1630 Cmu-Chr9:31159466 Cmu01g0448 Cmu-Chr1:4645907 1.50E-158 transposed
Cmu01g0448 Cmu-Chr1:4645907 Cmu07g1648 Cmu-Chr7:31814326 2.00E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75188 PF06246 Isy1 3.40E-88 No_clan Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0448 - - - 0.0