Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0461 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAACCCAATAACAATGCCATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTTAAAAAGCTTTCAGAATTCAAAAAAACAGCTCTCAAAATCGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCTTGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCGTCAAGGATTACGGCGTTGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGTCGGTTGTTGCAGGCGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGACGGGTCGGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTAGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGCAATACTGCGGGACCCGAAAACCACCAAGCAGTAGCCCTTCGGTCAGGTTCCGATCTCTCAGTGTTCTTCCGGTGCGGTTTTGAGGGATACCAAGACACTCTCTACGTGCATTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACGGTCGATTTCATCTTCGGTAATGCCGCCGTAGTTCTCCAGAACTGCATGATCTACGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTGGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCAACTGCTAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCATCAAAGTTTACCGTTGGGAATTTTATTGCTGGGACTTCATGGCTGCCTGGAACTGGAGTACCATTCACTGCTGGACTTTGA 1560 46.35 MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSEFKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGVKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGSGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLGSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTARRVKWKGYRVITSATEASKFTVGNFIAGTSWLPGTGVPFTAGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4746036 4748616 - CmPI595203_01g004610.1 Cmu01g0461 405967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0461 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Cmu01g0461 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857(InterPro)
Cmu01g0461 519 NCBIfam pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857(InterPro)
Cmu01g0461 519 FunFam Pectinesterase 203 519 - -
Cmu01g0461 519 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Cmu01g0461 519 CDD PMEI-like_3 35 175 - -
Cmu01g0461 519 PANTHER PECTINESTERASE 9 509 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu01g0461 519 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Cmu01g0461 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Cmu01g0461 519 Gene3D - 203 519 IPR012334 -
Cmu01g0461 519 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
Cmu01g0461 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Cmu01g0461 519 Pfam Pectinesterase 209 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0461 Cmu-Chr1:4746036 Cmu05g0821 Cmu-Chr5:7424347 1.10E-195 dispersed
Cmu10g1411 Cmu-Chr10:7896311 Cmu01g0461 Cmu-Chr1:4746036 7.00E-152 transposed
Cmu01g0461 Cmu-Chr1:4746036 Cmu05g0260 Cmu-Chr5:2221151 1.20E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0461 K01051 - csv:101216005 920.998