Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu01g0480 ATGGTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTCCCGCTTCCGAAAATCCGTCACCTCGACCGCACTCCGATCGTACGTCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTCGGAGCATCCATGTCCTCCCGGAAGTTTTTGCCGGGTGTTGTTGCTACGACAGACCCGTCGAGTCTTCTGATGGCCGCCATCGCCAATGCCTTCGCTTTGGCCTCGGCTGTTTACATTGCCGCCAACATCTCCGGCGGACATCTCAACCCGGCTGTGACGTTCGGAATGGCCGTCGCCGGCCATGTTAGTGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGTATTGTTCTTAGAGCCACCCTTGTTGGACAGCGCGTTACAAGCTATGCCATCACTGAAGAGATGACGGGCTTCGGAGCGTCGGTAGTGGAAGGTGTATTGACATTTGCCCTAGTATACACCGTTTTCGCTGCCAGCGACTCAAGAAGAGGTCCGTGCAATGCGATCGGCGCTGTGATGATTGGGCTGATGGCTGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCGGCATGCGCGTTTGGGTCAGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGTGGTGTAA 786 54.58 MVFCKMAPTSLASRFRKSVTSTALRSYVAEFISTFFYVFSVVGASMSSRKFLPGVVATTDPSSLLMAAIANAFALASAVYIAANISGGHLNPAVTFGMAVAGHVSVPTALFYWFAQMLASVMACIVLRATLVGQRVTSYAITEEMTGFGASVVEGVLTFALVYTVFAASDSRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVVV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4947100 4948310 + CmPI595203_01g004800.1 Cmu01g0480 405986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu01g0480 261 Pfam Major intrinsic protein 20 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Cmu01g0480 261 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu01g0480 261 FunFam Probable aquaporin TIP5-1 9 251 - -
Cmu01g0480 261 PANTHER AQUAPORIN-8 16 245 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cmu01g0480 261 Gene3D Glycerol uptake facilitator protein. 10 252 IPR023271 -
Cmu01g0480 261 SUPERFAMILY Aquaporin-like 20 247 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0480 Cmu-Chr1:4947100 Cmu09g0176 Cmu-Chr9:1930694 1.00E-48 dispersed
Cmu01g0480 Cmu-Chr1:4947100 Cmu04g0978 Cmu-Chr4:24221808 1.50E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu01g0480 K09873 - csv:101214078 442.195